Gene detail

Detail information of GWHGAAZE027187

Functional Annotation

Database	Orthologs	Annotation
Nr	KGN59887.1	hypothetical protein Csa_3G851870 [Cucumis sativus]
Swissprot	tr\|Q9LK35\|THE1_ARATH	Receptor-like protein kinase THESEUS 1 (Precursor)
trEMBL	tr\|A0A0A0LGD9\|A0A0A0LGD9_CUCSA	Uncharacterized protein {ECO:0000313\|EMBL:KGN59887.1}
TAIR10	AT5G54380.1	protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	15953699	15956173	+
GWHAAZE00000008	mRNA	15953699	15956173	+
GWHAAZE00000008	exon	15953699	15955344	+
GWHAAZE00000008	exon	15955672	15956173	+
GWHAAZE00000008	CDS	15953699	15955344	+
GWHAAZE00000008	CDS	15955672	15956173	+

Transcript Sequence
>GWHTAAZE027221 ATGGGTCATGAATCTTGGGCCTTATTCACTCCTGTTGATAACTACTTGATTGCCTGTGGAACTTCACAAAATGTTACATTCCTTGGCCAGACCTATGTCCCTGATTCTCTACACTCTTCAGTTGCATTGAAAAGTCAGGGGAATTCAATTGTTGCTACCTCCAATTCTAGTGCCCCGTTTCTGATCTACCACTCTGCCCGAATTTTCCCAACTCGATCATCTTACAAATTCAACATTGAGCACAAGGGTCGGCATTGGGTCCGACTCTACTTTTTCCCTCTTCCGGATGAAGGCCACAACTTGACATCGGCCTCTTTTACTGTAATCACCCAAAATTTCGTGCTCTTGAACAACTTCACTTTCAACAAGTACAATGGTTCTTATCTCTTTAAGGAGTATGCAATCAGTGTGACTGATGATACCTTGACTCTTACCTTTATCCCTTCAAACAATTCAAGAGCGTTTGTAAACGCGATTGAAGTTGTCTCTATCCCAGATACGGTGCTCCCTGATATGGCACAGTCTGTATCTCCGCCTGCCCCTTTTAGCGGCCTTTCATCACTTGCTTTTGAAACTGTTTACCGGTTAAATATGGGCGGTCCATTGATCACTGCTCAAAACGACACTCTAGGAAGAACTTGGGAAAATGATGTGAAATACCTCCATGTTAATAGCTCTGCTTTGAATGTTTCGGTTAACCCTTCGATCATCAAATACCCAGCTGCAGTCACACCCGAAACGGCACCAAATTGGGTTTATGCAACTGCTGAAAGCATGGGAGATGCAAATGTGCCCAACTTGAACTTCAATATAACTTGGGTTCTCCCGGTTAGTCCAAATTTCACTTATTTTGTCCGGGTACATTTCTGCGATATTGTGAGCACGTCTCTGAACACTCTTGTGTTCAATCTCTATATAAATTCAGATATCGCATTTGGGAGTTTGGACCTGTCGAGCTTAGCTGGTCACTTGAATGTGCCTTATTACAAAGATTTTGTTGCCAAGTCTTCGGCTGAATCAAATACGTTAACTGTTAGTGTCGGTCCAGACACAAGTGCTGATGTAACAAATGCGATAATGAATGGTTTGGAAGTTATGAAGATTAGCAACGAAGCTAGAAGCTTGGATGGGGTTTTACCGGTTGAAACTCTCCTTGTATTGCCGTCGAGAAAGCACAACAGAGTTATCATAATCAGCTCTGTTGTAGGTGCATCATCTCTTGTGTTATTTATAGGTTTGTGCTATTGCTGCTTGGTAGCCCGAAGGTCAAAGACTAATCAGCAGGGGAATTCATGGCTTCCTCTGCCCTTATATGGAAACTCTCTGACAATGACAAAGATGTCAACAACTTCTCAAAAGAGTGGAACAGCGAGCTGCATCTCGTTAGCTTCCTGCAATCTTGGCCGTTTATTCTCGATCCAAGAAATTATGGATGGAACTAATAAGTTCGACGAGAGCTTGCTTTTGGGGGTCGGTGGATTTGGTAGGGTCTATAAGGGAACCTTGGAAGATGGGACGAATGTAGCTGTCAAAAGAGGGAACCCGAGATCTGAACAAGGTCTTGCCGAATTCCGAACTGAGATTGAAATGTTGTCGAAGCTCCGCCATCGCCACCTCGTCTCTCTCATCGGCTATTGCGATGAACGGCAACAGCTCACGGAGAAATCAGATGTGTATTCATTTGGAGTTGTTCTAATGGAAGTTCTCTGCACAAGACCGGCTCTAAATCCCGTTCTTCCTAGAGATCAAGTTAATATTGCAGAATGGGCAATGAATTGGCAAAAGAAGGGTATGTTGGATCAAATAATGGACTCGAATCTTGTAGGGAAGGTGAACCCAGCTTCTCTGAAGAAATTTGGGGAGACAGCGGAGAAATGTTTGGCCGAGCACGGGGTTGATAGGCCTTCGATGGGAGATGTTCTGTGGAATTTAGAATATGCACTTCAGCTTGAAGAGACCTCATCAGCTTTAATGGAACCGGAAGATAACAGCACAAACCATATCCCCGATATTCCAATGACTCCGCTTGAGCCGTTTGATAATAGTGTAACTATGATCCAAGGGGTGAACTCGAGCACAGATGACGATGCAGAGGATGCAGCCACTAGTGCCGTCTTCTCTCAGCTGGTAAATCCCCGTGGAAGATGA

Network for GWHGAAZE027187

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	17	368	5.70E-41
PF07714.18	PK_Tyr_Ser-Thr	489	551	4.20E-09

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.569
	SRR3591706	second leaf	10.138
	SRR3591707	mature leaf	2.254
	SRR3591708	Shoot apex	11.615
	SRR3591709	Stem	10.301
	SRR3591710	White floral bud	8.522
	SRR3591711	White flower	6.085
	SRR3591712	Green floral bud	7.065
	SRR3591713	Yellow flower	1.884
SRP173429	SRR8316895	Juvenile bud stage	9.712
	SRR8316896	Juvenile bud stage	10.466
	SRR8316897	Juvenile bud stage	5.387
	SRR8316894	Third green stage	1.997
	SRR8316900	Third green stage	4.343
	SRR8316901	Third green stage	5.671
	SRR8316898	Complete white stage	1.905
	SRR8316899	Complete white stage	9.336
	SRR8316903	Complete white stage	3.292
	SRR8316902	Silver flowering stage	4.648
	SRR8316904	Silver flowering stage	2.145
	SRR8316905	Silver flowering stage	0.936
	SRR8316906	Gold flowering stage	1.817
	SRR8316907	Gold flowering stage	2.328
	SRR8316908	Gold flowering stage	2.352
SRP132670	SRR6706286	Control	6.957
	SRR6706287	Light intensity 50%	8.728
	SRR6706288	Light intensity 20%	9.074
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.277
	CNS0095593	Slightly white alabastrum(diploid) 2	4.596
	CNS0095594	Slightly white alabastrum(diploid) 3	4.401
	CNS0095595	Whole white alabastrum(diploid) 2	5.224
	CNS0095596	Whole white alabastrum(diploid) 3	2.724
	CNS0095597	Whole white alabastrum(diploid) 4	2.761
	CNS0095598	Silvery flower (diploied) 1	8.388
	CNS0095599	Silvery flower (diploied) 2	9.642
	CNS0095600	Silvery flower (diploied) 3	8.686
	CNS0095601	Golden flower (diploid) 1	7.590
	CNS0095602	Golden flower (diploid) 2	11.233
	CNS0095603	Golden flower (diploid) 3	10.363
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.938
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.457
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.065
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.289
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.612
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.441
	CNS0095610	Silvery flower (tetraploid) 1	2.454
	CNS0095611	Silvery flower (tetraploid) 2	2.242
	CNS0095612	Silvery flower (tetraploid) 3	2.484
	CNS0095613	Golden flower (tetraploid) 1	0.573
	CNS0095614	Golden flower (tetraploid) 2	1.626
	CNS0095615	Golden flower (tetraploid) 3	0.880
CRA001975	CRR073297	Stem 1	12.265
	CRR073298	Stem 2	9.206
	CRR073299	Stem 3	10.270
	CRR073300	Leaf 1	10.019
	CRR073301	Leaf 2	10.047
	CRR073302	Leaf 3	7.087
	CRR073303	Juvenile bud 1	7.053
	CRR073304	Juvenile bud 2	7.051
	CRR073305	Juvenile bud 3	14.751
	CRR073306	Third green 1	7.063
	CRR073307	Third green 2	10.829
	CRR073308	Third green 3	7.911
	CRR073309	Second white 1	1.205
	CRR073310	Second white 2	1.949
	CRR073311	Second white 3	1.351
	CRR073312	Silver flowering 1	1.944
	CRR073313	Silver flowering 2	1.731
	CRR073314	Silver flowering 3	0.675
	CRR073315	Gold flowering 1	62.191
	CRR073316	Gold flowering 2	85.842
	CRR073317	Gold flowering 3	32.530
	CRR073318	Tawny withering 1	25.950
	CRR073319	Tawny withering 2	25.036
	CRR073320	Tawny withering 3	29.294