Gene detail

Detail information of GWHGAAZE027186

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007021327.1	4.2464E-171	NAC domain protein, IPR003441 [Theobroma cacao]
Swissprot	tr\|Q8GY42\|NAC25_ARATH	5E-101	NAC transcription factor 25
trEMBL	tr\|A0A061F818\|A0A061F818_THECC	2E-171	NAC domain protein, IPR003441 {ECO:0000313\|EMBL:EOY12852.1}
TAIR10	AT3G15510.1	2E-87	NAC domain containing protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	15927533	15928919	+
GWHAAZE00000008	mRNA	15927533	15928919	+
GWHAAZE00000008	exon	15927533	15927716	+
GWHAAZE00000008	exon	15927874	15928161	+
GWHAAZE00000008	exon	15928324	15928919	+
GWHAAZE00000008	CDS	15927533	15927716	+
GWHAAZE00000008	CDS	15927874	15928161	+
GWHAAZE00000008	CDS	15928324	15928919	+

Transcript Sequence
>GWHTAAZE027220 ATGGAAAGTACCGATTCGTCGACCGGCTCCCAACACCCACAGCTGCCGCCGGGCTTCCGTTTCCACCCCACCGACGAAGAGCTTGTGGTTCACTACCTCAAGAAAAAGGTTGCTTCGGTCCCCCTTCCTGTCTCTATCATAGCCGAGGTCGATCTCTACAAGTTCGACCCATGGGAACTCCCAGCCAAGGCTACGTTTGGGGAGCAGGAGTGGTACTTTTTCAGCCCGAGGGACCGCAAGTATCCAAACGGGGCGAGGCCTAACCGAGCTGCCACTTCAGGGTACTGGAAAGCTACCGGAACAGACAAGCCGGTGCTGACTTCAGGTGGGAGCCAGAAAGTGGGTGTTAAGAAGGCTCTGGTCTTCTATGGAGGGAAACCCCCCAAAGGGATCAAAACCAATTGGATCATGCACGAATATAGACTTGCTGATACCAAACCTAATACAAAGCCTCCAGCTGGTTGTGACTTGGAAGTAATAATTGATAGTTTTGATTTGGTTGGTTGGTTGGTTGATTTATATATATATATATAGCTTGATGATTGGGTGTTGTGTCGAATCTACAAGAAGAACAACATGCAGAGGCCGTTGGATCACGAGAGGGATGATTCCATGACTGATATGATCCCATCGTTCATTCCATTAGGCCAACAGAATTATCACAAACTACAAGGCATCAAGTCCCCGAGCTTTGGCACATTGATGGAAAATGAACACAACAACATGTTCGATGTAATGCTTAGCAATGATGTTATCAACAACGGGTCACTTTCACAGTTGGCTTCGTCTAGTTCCAAAGCACAGATCCCCGTGAAGCGGAGCCTCCCATCTCTGTTCTGGAACGAGGATGGAATTGGCGGCTCCTCTTCTTCAACAAAACGATTCCTAGCAGAAAATAATGATGAAAATGGTAGCGTTGTGAGGACCGATGACAACACTTCTATCGCCAGTTTGCTGAGTCAACTTCCTCAAACTCCGCAAATGCATCAACAAGCGATGTTGGGGTCTATTGGTGATGGAGTATTTCGACAGCCTTACCAACTCCCCGATATGAATTGGTACTCTTAG

Network for GWHGAAZE027186

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0013	Protein Kinases RLK-Pelle_RLCK-VIIa-2 family Protein Kinases RLK-Pelle_RLCK-VIIa-2 Transcription factor NAC family Transcription factor NAC map02024 Quorum sensing map00040 Pentose and glucuronate interconversions

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	16	142	8.20E-40

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.780
	SRR3591708	Shoot apex	0.204
	SRR3591709	Stem	0.538
	SRR3591710	White floral bud	20.215
	SRR3591711	White flower	9.675
	SRR3591712	Green floral bud	42.672
	SRR3591713	Yellow flower	6.167
SRP173429	SRR8316895	Juvenile bud stage	10.353
	SRR8316896	Juvenile bud stage	21.583
	SRR8316897	Juvenile bud stage	10.282
	SRR8316894	Third green stage	7.498
	SRR8316900	Third green stage	21.306
	SRR8316901	Third green stage	12.978
	SRR8316898	Complete white stage	11.197
	SRR8316899	Complete white stage	22.117
	SRR8316903	Complete white stage	12.176
	SRR8316902	Silver flowering stage	1.859
	SRR8316904	Silver flowering stage	2.681
	SRR8316905	Silver flowering stage	1.652
	SRR8316906	Gold flowering stage	4.487
	SRR8316907	Gold flowering stage	4.756
	SRR8316908	Gold flowering stage	4.793
SRP132670	SRR6706286	Control	30.655
	SRR6706287	Light intensity 50%	35.507
	SRR6706288	Light intensity 20%	38.405
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.160
	CNS0095593	Slightly white alabastrum(diploid) 2	0.883
	CNS0095594	Slightly white alabastrum(diploid) 3	6.619
	CNS0095595	Whole white alabastrum(diploid) 2	0.475
	CNS0095596	Whole white alabastrum(diploid) 3	1.017
	CNS0095597	Whole white alabastrum(diploid) 4	1.327
	CNS0095598	Silvery flower (diploied) 1	1.747
	CNS0095599	Silvery flower (diploied) 2	2.087
	CNS0095600	Silvery flower (diploied) 3	10.768
	CNS0095601	Golden flower (diploid) 1	0.981
	CNS0095602	Golden flower (diploid) 2	5.577
	CNS0095603	Golden flower (diploid) 3	4.169
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.441
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.385
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.606
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.505
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.160
	CNS0095610	Silvery flower (tetraploid) 1	4.191
	CNS0095611	Silvery flower (tetraploid) 2	5.808
	CNS0095612	Silvery flower (tetraploid) 3	4.438
	CNS0095613	Golden flower (tetraploid) 1	0.713
	CNS0095614	Golden flower (tetraploid) 2	4.643
	CNS0095615	Golden flower (tetraploid) 3	0.885
CRA001975	CRR073297	Stem 1	55.613
	CRR073298	Stem 2	34.570
	CRR073299	Stem 3	73.718
	CRR073300	Leaf 1	12.389
	CRR073301	Leaf 2	11.866
	CRR073302	Leaf 3	18.930
	CRR073303	Juvenile bud 1	3.197
	CRR073304	Juvenile bud 2	11.627
	CRR073305	Juvenile bud 3	6.196
	CRR073306	Third green 1	0.356
	CRR073307	Third green 2	2.584
	CRR073308	Third green 3	1.100
	CRR073309	Second white 1	0.211
	CRR073310	Second white 2	0.323
	CRR073311	Second white 3	0.190
	CRR073312	Silver flowering 1	0.693
	CRR073313	Silver flowering 2	0.073
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.383
	CRR073316	Gold flowering 2	0.507
	CRR073317	Gold flowering 3	0.217
	CRR073318	Tawny withering 1	0.132
	CRR073319	Tawny withering 2	0.059
	CRR073320	Tawny withering 3	0.230