Gene detail

Detail information of GWHGAAZE027185

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011095243.1	2.5908E-162	PREDICTED: NAC domain-containing protein 72-like [Sesamum indicum]
Swissprot	tr\|Q93VY3\|NAC72_ARATH	5E-123	NAC domain-containing protein 72
trEMBL	tr\|A0A022QZL0\|A0A022QZL0_ERYGU	8E-162	Uncharacterized protein {ECO:0000313\|EMBL:EYU33416.1}
TAIR10	AT4G27410.2	7E-99	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	15893376	15894541	+
GWHAAZE00000008	mRNA	15893376	15894541	+
GWHAAZE00000008	exon	15893376	15893556	+
GWHAAZE00000008	exon	15893642	15893910	+
GWHAAZE00000008	exon	15894005	15894541	+
GWHAAZE00000008	CDS	15893376	15893556	+
GWHAAZE00000008	CDS	15893642	15893910	+
GWHAAZE00000008	CDS	15894005	15894541	+

Transcript Sequence
>GWHTAAZE027219 ATGGGTGTGCAATGCACGGACCCTCTTTCCCAATTAAGCCTGCCACCAGGATTCCGATTTTATCCTACCGACGAGGAGCTTTTGGTTCAATATCTGTGCCGGAAAATAGCCGGACATCATTTTAATCTTCAAATAATTGGAGATATTGATTTGTACAAATTCGATCCTTGGGTTCTACCCAGTAAAGCGGTGTTTGGAGAGAAAGAGTGGTACTTCTTTAGTCCAAGAGATAGGAAGTACCCAAACGGGTCGAGACCGAACAGAGTGGCCGGGTCTGGGTATTGGAAGGCAACAGGAACAGATAAGTTCATATTTACAGAGGGACGAAAAGTGGGTATAAAGAAAGCTCTGGTATTCTACATTGGCAAAGCTCCAAAAGGAACAAAAACAAACTGGATTATGCACGAATACAGAGTATCAATGCCTCAAAGAAAAAATGGTAGTGCTAAGTTGGATGATTGGGTTCTTTGTCGGATTTACAAGAAGAATTCGAGTGCACAAAAAACCCAAATGGGTGATACAAGCGAAGAATACAGTCATGGTTCCTCGCCTTCATCTTCATCTCCATCACGCTACGACGACGTTTTGGATTCGCTGCCGGAGATTAACGACCGCTTTTTCACTCTGCCTCGAATGAATTCCCTCAAATCGTTCCAACAAGACGAGAAGCTCAATTTATCCAATTTGGGTTCGGGGAATTTCGATTGGGCGAGTCTCGCCGCACTCAACTCGTTGCCGGAACCAGTTCAAGCTCCGGTGGTGGCTCAGGGGACTTTGAATTGCAACAATAATATGAATGACATGTGTGTCCCTTCTTTATCACCGCCCTGTCAGGTGGACGAAGAGGTTGAGAGCGGACATAGAAATCGGCTATTTCAGAATTCGGGTTTCTTTCAGCATGGGCCGAATGATTTTTCACAGAGTTTCTCAGACCCGTTTGGTTTTCGGTACCCGACTCAATCTGGGGACCTCGGCTTTAGGCAGTGA

Network for GWHGAAZE027185

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	15	139	1.20E-35

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	102.085
	SRR3591706	second leaf	12.497
	SRR3591707	mature leaf	17.836
	SRR3591708	Shoot apex	84.869
	SRR3591709	Stem	100.687
	SRR3591710	White floral bud	61.122
	SRR3591711	White flower	408.294
	SRR3591712	Green floral bud	14.367
	SRR3591713	Yellow flower	644.468
SRP173429	SRR8316895	Juvenile bud stage	34.963
	SRR8316896	Juvenile bud stage	46.009
	SRR8316897	Juvenile bud stage	32.228
	SRR8316894	Third green stage	1.537
	SRR8316900	Third green stage	7.536
	SRR8316901	Third green stage	16.121
	SRR8316898	Complete white stage	14.197
	SRR8316899	Complete white stage	27.705
	SRR8316903	Complete white stage	15.975
	SRR8316902	Silver flowering stage	108.684
	SRR8316904	Silver flowering stage	103.871
	SRR8316905	Silver flowering stage	79.849
	SRR8316906	Gold flowering stage	475.023
	SRR8316907	Gold flowering stage	279.375
	SRR8316908	Gold flowering stage	330.564
SRP132670	SRR6706286	Control	11.412
	SRR6706287	Light intensity 50%	6.589
	SRR6706288	Light intensity 20%	4.850
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	61.521
	CNS0095593	Slightly white alabastrum(diploid) 2	22.555
	CNS0095594	Slightly white alabastrum(diploid) 3	26.847
	CNS0095595	Whole white alabastrum(diploid) 2	30.590
	CNS0095596	Whole white alabastrum(diploid) 3	10.612
	CNS0095597	Whole white alabastrum(diploid) 4	16.747
	CNS0095598	Silvery flower (diploied) 1	87.898
	CNS0095599	Silvery flower (diploied) 2	153.579
	CNS0095600	Silvery flower (diploied) 3	229.515
	CNS0095601	Golden flower (diploid) 1	189.893
	CNS0095602	Golden flower (diploid) 2	296.916
	CNS0095603	Golden flower (diploid) 3	289.018
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.094
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.548
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.443
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.634
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.706
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.669
	CNS0095610	Silvery flower (tetraploid) 1	356.947
	CNS0095611	Silvery flower (tetraploid) 2	373.657
	CNS0095612	Silvery flower (tetraploid) 3	45.057
	CNS0095613	Golden flower (tetraploid) 1	201.946
	CNS0095614	Golden flower (tetraploid) 2	344.601
	CNS0095615	Golden flower (tetraploid) 3	295.775
CRA001975	CRR073297	Stem 1	45.693
	CRR073298	Stem 2	49.954
	CRR073299	Stem 3	57.530
	CRR073300	Leaf 1	55.152
	CRR073301	Leaf 2	105.339
	CRR073302	Leaf 3	24.547
	CRR073303	Juvenile bud 1	51.485
	CRR073304	Juvenile bud 2	63.784
	CRR073305	Juvenile bud 3	81.840
	CRR073306	Third green 1	222.296
	CRR073307	Third green 2	138.694
	CRR073308	Third green 3	133.973
	CRR073309	Second white 1	243.266
	CRR073310	Second white 2	305.458
	CRR073311	Second white 3	211.816
	CRR073312	Silver flowering 1	440.641
	CRR073313	Silver flowering 2	411.833
	CRR073314	Silver flowering 3	517.841
	CRR073315	Gold flowering 1	15.648
	CRR073316	Gold flowering 2	20.326
	CRR073317	Gold flowering 3	12.499
	CRR073318	Tawny withering 1	66.961
	CRR073319	Tawny withering 2	124.885
	CRR073320	Tawny withering 3	65.161