Detail information of GWHGAAZE027171


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002282248.21.32235E-91PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Vitis vinifera]
Swissprottr|Q6R567|RMA1_CAPAN4E-58E3 ubiquitin-protein ligase RMA1H1
trEMBLtr|F6H256|F6H256_VITVI4E-92Putative uncharacterized protein {ECO:0000313|EMBL:CCB46352.1}
TAIR10AT4G27470.16E-47RING membrane-anchor 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1566274215663476+
GWHAAZE00000008mRNA1566274215663476+
GWHAAZE00000008exon1566274215663318+
GWHAAZE00000008exon1566336415663476+
GWHAAZE00000008CDS1566274215663318+
GWHAAZE00000008CDS1566336415663476+
Transcript Sequence

Network for GWHGAAZE027171

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00097.26zf-C3HC430763.30E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K10666RNF5 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.587
SRR3591706second leaf11.504
SRR3591707mature leaf6.709
SRR3591708Shoot apex15.242
SRR3591709Stem44.112
SRR3591710White floral bud23.403
SRR3591711White flower82.445
SRR3591712Green floral bud26.755
SRR3591713Yellow flower96.833
SRP173429 SRR8316895Juvenile bud stage 22.646
SRR8316896Juvenile bud stage 34.680
SRR8316897Juvenile bud stage 18.376
SRR8316894Third green stage 10.900
SRR8316900Third green stage 24.584
SRR8316901Third green stage 28.383
SRR8316898Complete white stage 6.247
SRR8316899Complete white stage 39.495
SRR8316903Complete white stage 10.450
SRR8316902Silver flowering stage23.113
SRR8316904Silver flowering stage22.310
SRR8316905Silver flowering stage13.671
SRR8316906Gold flowering stage 111.285
SRR8316907Gold flowering stage 95.272
SRR8316908Gold flowering stage 82.945
SRP132670SRR6706286Control21.915
SRR6706287Light intensity 50%22.462
SRR6706288Light intensity 20%21.476
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.919
CNS0095593Slightly white alabastrum(diploid) 226.864
CNS0095594Slightly white alabastrum(diploid) 318.111
CNS0095595Whole white alabastrum(diploid) 216.994
CNS0095596Whole white alabastrum(diploid) 38.894
CNS0095597Whole white alabastrum(diploid) 416.721
CNS0095598Silvery flower (diploied) 136.413
CNS0095599Silvery flower (diploied) 236.672
CNS0095600Silvery flower (diploied) 334.948
CNS0095601Golden flower (diploid) 131.451
CNS0095602Golden flower (diploid) 257.840
CNS0095603Golden flower (diploid) 350.688
CNS0095604Slightly white alabastrum(tetraploid) 19.399
CNS0095605Slightly white alabastrum(tetraploid) 27.686
CNS0095606Slightly white alabastrum(tetraploid) 316.959
CNS0095607Whole white alabastrum(tetraploid) 15.102
CNS0095608Whole white alabastrum(tetraploid) 27.770
CNS0095609Whole white alabastrum(tetraploid) 313.222
CNS0095610Silvery flower (tetraploid) 121.943
CNS0095611Silvery flower (tetraploid) 215.464
CNS0095612Silvery flower (tetraploid) 320.471
CNS0095613Golden flower (tetraploid) 120.764
CNS0095614Golden flower (tetraploid) 223.824
CNS0095615Golden flower (tetraploid) 323.645
CRA001975CRR073297Stem 122.399
CRR073298Stem 226.061
CRR073299Stem 326.342
CRR073300Leaf 140.951
CRR073301Leaf 244.311
CRR073302Leaf 326.100
CRR073303Juvenile bud 137.006
CRR073304Juvenile bud 229.240
CRR073305Juvenile bud 373.271
CRR073306Third green 119.619
CRR073307Third green 217.558
CRR073308Third green 319.022
CRR073309Second white 160.423
CRR073310Second white 243.588
CRR073311Second white 352.361
CRR073312Silver flowering 1134.104
CRR073313Silver flowering 2148.269
CRR073314Silver flowering 3140.037
CRR073315Gold flowering 17.554
CRR073316Gold flowering 29.165
CRR073317Gold flowering 39.543
CRR073318Tawny withering 135.815
CRR073319Tawny withering 253.356
CRR073320Tawny withering 354.945