Detail information of GWHGAAZE027163


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007021485.10Kinase superfamily protein [Theobroma cacao]
COGYP_003371239.17E-25serine/threonine protein kinase
Swissprottr|F4I114|Y1960_ARATH0Probable serine/threonine-protein kinase At1g09600
trEMBLtr|A0A061F6L1|A0A061F6L1_THECC0Kinase superfamily protein {ECO:0000313|EMBL:EOY13010.1}
TAIR10AT1G53050.10Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1558761015593196-
GWHAAZE00000008mRNA1558761015593196-
GWHAAZE00000008exon1558761015587816-
GWHAAZE00000008exon1558859115589058-
GWHAAZE00000008exon1558914715589264-
GWHAAZE00000008exon1558947415589574-
GWHAAZE00000008exon1559063915590866-
GWHAAZE00000008exon1559096915591286-
GWHAAZE00000008exon1559140115591685-
GWHAAZE00000008exon1559278615593196-
GWHAAZE00000008CDS1559278615593196-
GWHAAZE00000008CDS1559140115591685-
GWHAAZE00000008CDS1559096915591286-
GWHAAZE00000008CDS1559063915590866-
GWHAAZE00000008CDS1558947415589574-
GWHAAZE00000008CDS1558914715589264-
GWHAAZE00000008CDS1558859115589058-
GWHAAZE00000008CDS1558761015587816-
Transcript Sequence

Network for GWHGAAZE027163

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase1324164.10E-69
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyCMGC_CDK-CRK7-CDK9

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.179
SRR3591706second leaf38.868
SRR3591707mature leaf42.483
SRR3591708Shoot apex63.233
SRR3591709Stem55.200
SRR3591710White floral bud57.281
SRR3591711White flower52.446
SRR3591712Green floral bud32.703
SRR3591713Yellow flower25.701
SRP173429 SRR8316895Juvenile bud stage 33.998
SRR8316896Juvenile bud stage 44.996
SRR8316897Juvenile bud stage 21.126
SRR8316894Third green stage 14.904
SRR8316900Third green stage 30.113
SRR8316901Third green stage 28.502
SRR8316898Complete white stage 22.744
SRR8316899Complete white stage 47.979
SRR8316903Complete white stage 39.650
SRR8316902Silver flowering stage32.081
SRR8316904Silver flowering stage51.480
SRR8316905Silver flowering stage25.303
SRR8316906Gold flowering stage 77.686
SRR8316907Gold flowering stage 78.660
SRR8316908Gold flowering stage 89.139
SRP132670SRR6706286Control39.457
SRR6706287Light intensity 50%42.422
SRR6706288Light intensity 20%44.088
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.457
CNS0095593Slightly white alabastrum(diploid) 226.339
CNS0095594Slightly white alabastrum(diploid) 322.257
CNS0095595Whole white alabastrum(diploid) 225.088
CNS0095596Whole white alabastrum(diploid) 314.103
CNS0095597Whole white alabastrum(diploid) 416.460
CNS0095598Silvery flower (diploied) 152.732
CNS0095599Silvery flower (diploied) 252.985
CNS0095600Silvery flower (diploied) 358.436
CNS0095601Golden flower (diploid) 145.634
CNS0095602Golden flower (diploid) 254.295
CNS0095603Golden flower (diploid) 355.177
CNS0095604Slightly white alabastrum(tetraploid) 125.539
CNS0095605Slightly white alabastrum(tetraploid) 222.240
CNS0095606Slightly white alabastrum(tetraploid) 360.791
CNS0095607Whole white alabastrum(tetraploid) 114.928
CNS0095608Whole white alabastrum(tetraploid) 29.689
CNS0095609Whole white alabastrum(tetraploid) 327.189
CNS0095610Silvery flower (tetraploid) 145.940
CNS0095611Silvery flower (tetraploid) 252.973
CNS0095612Silvery flower (tetraploid) 3211.575
CNS0095613Golden flower (tetraploid) 130.255
CNS0095614Golden flower (tetraploid) 233.935
CNS0095615Golden flower (tetraploid) 344.190
CRA001975CRR073297Stem 153.145
CRR073298Stem 247.663
CRR073299Stem 346.541
CRR073300Leaf 141.623
CRR073301Leaf 240.420
CRR073302Leaf 331.444
CRR073303Juvenile bud 130.965
CRR073304Juvenile bud 225.354
CRR073305Juvenile bud 341.256
CRR073306Third green 1177.714
CRR073307Third green 2126.152
CRR073308Third green 3147.236
CRR073309Second white 1234.792
CRR073310Second white 2228.978
CRR073311Second white 3245.801
CRR073312Silver flowering 1178.927
CRR073313Silver flowering 2155.697
CRR073314Silver flowering 3129.503
CRR073315Gold flowering 122.688
CRR073316Gold flowering 229.312
CRR073317Gold flowering 323.020
CRR073318Tawny withering 123.757
CRR073319Tawny withering 225.102
CRR073320Tawny withering 330.393