Gene detail

Detail information of GWHGAAZE027153

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282588.1	0	PREDICTED: phytosulfokine receptor 2 [Vitis vinifera]
COG	YP_004775215.1	1E-37	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9FN37\|PSKR2_ARATH	0	Phytosulfokine receptor 2 (Precursor)
trEMBL	tr\|F6H225\|F6H225_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46321.1}
TAIR10	AT5G53890.1	0	phytosylfokine-alpha receptor 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	15460404	15463532	-
GWHAAZE00000008	mRNA	15460404	15463532	-
GWHAAZE00000008	exon	15463324	15463532	-
GWHAAZE00000008	exon	15460404	15463233	-
GWHAAZE00000008	CDS	15463324	15463532	-
GWHAAZE00000008	CDS	15460404	15463233	-

Transcript Sequence
>GWHTAAZE027187 ATGAATTTTCTAAATTGGGTATTCTTGACTTGTTTTGTGTGTTCATCTTTCTTTCGTGCCACCCAAGAACAAGGTTGCCACCCAATTGATCTGCTGGCATTGAAAGAATTTGCTAGAAACCTCACAGAGGTTTCAATTTCTTCATCATGGTCGAATGATTCCATTTGCTGCAAATGGGATGGTGTTGTTTGTGACAATGGCGATAATGGGAAAGTGCTTGATCTTTCGCACAATCATCTCGAAGGTGTTTTTCCCTCGAACCTTTTAACGAATTTGAAGCAGCTTGAAGTTCTTGATTTGAGTCACAACATGTTAACTGGACCTGTTTCTGAAGCACTCCTCGGATCGAAATTCTTTTATTCAATTAACATTTCGAGCAACTTGTTCAATGGGGACTTGCTCAATCTTGGTGAATTTCAAAATCTTGTCGTCTTCAATGCAAGCAACAATTCATTCACAGGTGGTTTCAATTCAAGAATTTGCAGTTCGTCAAACAAGATCCGGATCGTTGATCTATCGATGAACCATTTCAATGGCGGTCTCGAAGGACTAAACAATTGCAACACATCTTTGCAGCAGTTTCATGTGGATTTCAATTCATTTTCCGGCCACTTACCAGAATCTTTGTACTCAATGTCTTCTCTGGAGCACCTTTCAGTCTCTGCCAACAATTTCTCTGGCCAGTTGAGCAAGAATCTCAGGAAGCTTTCTAGCCTCAAGAGCATAATTTTATATGGAAATCATTTTATGGGTCCATTTCCAAATGTATTTGAAAACTTCACACAATTAGAGCACTTTGTTGCGCATTCGAATTCATTCTCCGGGCCATTGCCTTCCACACTTACCCACTGCCCAAAATTGCGTGTTCTTGATCTTCGAAACAACTCTCTATCTGGTCCAATCGATCTTGATTTCACCCAATTGCGTCGTCTTTGTCAGCTTGATCTTGCCAGTAATAGTTTTCTTGGTACCCTGCCGGACTCATTATCAAGTTGCCAAGAATTGAGAGTATTGAGCCTCGCCAAGAACAAATTGAGCGGCCAGATTCCCGAGCACTATTCAAATCTTACATCCCTTGAAATTATCTCATTATCAAACAACAGTTTCGTTAATTTAAGTGGGGCGTTAACGACTCTACAGCATTGCGAGAACCTCACCTCTCTTATCCTCGCAAAGAATTTCAACGGAGAAGAAATCCCAAGAAATGTCGACGGGTTCAAAAGCTTAACAACTTTCGCCCTAGGGAATTGCGCGATTAAGGGCCGAATTCCAGTTTGGTTACTGAATTGCACTAAACTGCAAGTTCTTGATTTGTCTTGGAATCAGTTGAACGGGAGTATCCCTCATTGGATCGGTCAGATGGAGAGTTTATTTTACATCGACTTCTCGAATAATTCTCTTAGCGGAGAAATTCCAAGGAGTTTGACGAAGTTAAAGAGCCTCATTTCCACAAATTGCAGCTCATCAAATCTCAATGCTTCCACCGGTATTCCATTATACGTGAAGCGAAACCAGAGTGCTAGTGGTCTGCAGTACAATCAGGCTTCAAGTCTCCCTCCATCGATTATTTTGAGTAATAACAGAATAAACGGGACAATTTGGCCTGAAATTGGGAAACTGAGACGTCTCCACGTCCTAGATCTCAGCAAGAACAACATAACGGGGACCATCCCTAGCTCCATTTCAGATATGGGTAACATTGAAACTCTTGATTTATCTGGCAATAGTCTTTATGGGACGATCCCTTCATCGTTCAATAAGCTCACCTTTTTGTCAAAGTTTAGCGTGGCTAATAATCACTTGCAGGGTGCAATTCCGACCGGGGGCCAGTTCTTAAGCTTCCCCACCTCAAGTTTTGAGGGCAACCCCGGCCTTTGTGGGGGTATAGTTTCTCCTTGTAGCATTGTTACTAATATGGGGATCCAACCCAGTATCCCATCTGTCTCAAAGAGTAAATTTGGGCGAGGAGGTATCTTTGGAATCACAATTAGTGTCGGAGTTGGGATTGCTTTGCTCCTAGCTGTTGTTCTACTTAAAACGTCTAGAAGGGATGTGGGATATCCAGTTGAAGGATGTTTGGACGAGGAAAACAGGTTATCCGAAGCATTTGGATCTTCAAGATTGGTGCTTTTTCAGACTTCGGATTGCAAGGATCTCTCGGTAGCGGACTTGTTAAAATCGACCAACAATTTCAACCAAGCCAACATAATTGGCTGTGGAGGATTCGGTCTGGTTTACAAAGCTGACCTACCCAATGGGTCAAAAGCTGCAATCAAGCGTCTTTCTGGGGATTGCGGTCAAATGGACCGCGAATTCCAAGCCGAAGTTGAAGCCCTCTCAAGAGCTCAGCACAAGAACCTCGTGTCTCTTCAAGGGTACTGTCGCCACGGGAATGACCGGTTGTTGATCTACTCATATATGGAGAATGGTAGCTTAGATTACTGGCTGCATGAGAGGGTTGATAATAGTTTGCTTAATTGGGACAGTAGACTGAAAATAGCCCAAGGATCAGCTCGTGGGTTGTCTTACTTGCACAAGGAACCAAATATTGTTCATCGGGACATCAAAACAAGCAACATTCTTTTGGACGAGAGGCTCGAAGCTCATTTAGCCGATTTTGGGCTCTCGAGGTTACTTCGTCCTTACGATACCCATGTGACGACCGATTTGGTGGGGACCGTGGGGTACATTCCTCCTGAATATAGTCAAACATTGACGGCAACTTTTAGAGGTGATGTTTACAGCTTTGGGATTGTTCTGCTCGAGCTTCTTACGGGTAGAAGGCCAATGGAAGTTTGCAAGGGGAAGAATTGCAGAGATTTGGTTTCTTGGGTGTTTCAGATGAAATCCGATAAGAGGGAAAATGAGATATTCGATTCGTCGATTTGGAACAAGGATTACGAGAAGCAACTTTTGGAGGTGTTTGGTATAGCTTGTAAATGTATAGACCAGGATCCGAGGCGGAGACCCTCTATAGATCAAGTTGTTTCCTGGCTTGATGGGGTTGGAATGGACTCCACGGAGGCCGCTGCAAAATAA

Network for GWHGAAZE027153

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	30	65	1.00E-06
PF13855.7	LRR_8	408	467	1.70E-06
PF13855.7	LRR_8	541	601	1.10E-07
PF00069.26	Pkinase	732	997	9.80E-45

Protein Sequence

>GWHPAAZE027171
MNFLNWVFLTCFVCSSFFRATQEQGCHPIDLLALKEFARNLTEVSISSSWSNDSICCKWDGVVCDNGDNGKVLDLSHNHLEGVFPSNLLTNLKQLEVLDLSHNMLTGPVSEALLGSKFFYSINISSNLFNGDLLNLGEFQNLVVFNASNNSFTGGFNSRICSSSNKIRIVDLSMNHFNGGLEGLNNCNTSLQQFHVDFNSFSGHLPESLYSMSSLEHLSVSANNFSGQLSKNLRKLSSLKSIILYGNHFMGPFPNVFENFTQLEHFVAHSNSFSGPLPSTLTHCPKLRVLDLRNNSLSGPIDLDFTQLRRLCQLDLASNSFLGTLPDSLSSCQELRVLSLAKNKLSGQIPEHYSNLTSLEIISLSNNSFVNLSGALTTLQHCENLTSLILAKNFNGEEIPRNVDGFKSLTTFALGNCAIKGRIPVWLLNCTKLQVLDLSWNQLNGSIPHWIGQMESLFYIDFSNNSLSGEIPRSLTKLKSLISTNCSSSNLNASTGIPLYVKRNQSASGLQYNQASSLPPSIILSNNRINGTIWPEIGKLRRLHVLDLSKNNITGTIPSSISDMGNIETLDLSGNSLYGTIPSSFNKLTFLSKFSVANNHLQGAIPTGGQFLSFPTSSFEGNPGLCGGIVSPCSIVTNMGIQPSIPSVSKSKFGRGGIFGITISVGVGIALLLAVVLLKTSRRDVGYPVEGCLDEENRLSEAFGSSRLVLFQTSDCKDLSVADLLKSTNNFNQANIIGCGGFGLVYKADLPNGSKAAIKRLSGDCGQMDREFQAEVEALSRAQHKNLVSLQGYCRHGNDRLLIYSYMENGSLDYWLHERVDNSLLNWDSRLKIAQGSARGLSYLHKEPNIVHRDIKTSNILLDERLEAHLADFGLSRLLRPYDTHVTTDLVGTVGYIPPEYSQTLTATFRGDVYSFGIVLLELLTGRRPMEVCKGKNCRDLVSWVFQMKSDKRENEIFDSSIWNKDYEKQLLEVFGIACKCIDQDPRRRPSIDQVVSWLDGVGMDSTEAAAK

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.838
	SRR3591706	second leaf	3.291
	SRR3591707	mature leaf	2.186
	SRR3591708	Shoot apex	6.308
	SRR3591709	Stem	3.703
	SRR3591710	White floral bud	3.491
	SRR3591711	White flower	2.032
	SRR3591712	Green floral bud	3.069
	SRR3591713	Yellow flower	1.142
SRP173429	SRR8316895	Juvenile bud stage	3.916
	SRR8316896	Juvenile bud stage	6.381
	SRR8316897	Juvenile bud stage	3.137
	SRR8316894	Third green stage	0.785
	SRR8316900	Third green stage	1.964
	SRR8316901	Third green stage	1.603
	SRR8316898	Complete white stage	0.365
	SRR8316899	Complete white stage	1.594
	SRR8316903	Complete white stage	1.274
	SRR8316902	Silver flowering stage	0.959
	SRR8316904	Silver flowering stage	1.545
	SRR8316905	Silver flowering stage	0.410
	SRR8316906	Gold flowering stage	1.493
	SRR8316907	Gold flowering stage	1.246
	SRR8316908	Gold flowering stage	1.622
SRP132670	SRR6706286	Control	1.686
	SRR6706287	Light intensity 50%	1.515
	SRR6706288	Light intensity 20%	1.637
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.339
	CNS0095593	Slightly white alabastrum(diploid) 2	2.174
	CNS0095594	Slightly white alabastrum(diploid) 3	1.109
	CNS0095595	Whole white alabastrum(diploid) 2	1.394
	CNS0095596	Whole white alabastrum(diploid) 3	0.947
	CNS0095597	Whole white alabastrum(diploid) 4	1.270
	CNS0095598	Silvery flower (diploied) 1	2.624
	CNS0095599	Silvery flower (diploied) 2	1.438
	CNS0095600	Silvery flower (diploied) 3	2.237
	CNS0095601	Golden flower (diploid) 1	1.196
	CNS0095602	Golden flower (diploid) 2	1.930
	CNS0095603	Golden flower (diploid) 3	2.035
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.348
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.174
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.891
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.921
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.499
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.428
	CNS0095610	Silvery flower (tetraploid) 1	1.301
	CNS0095611	Silvery flower (tetraploid) 2	1.418
	CNS0095612	Silvery flower (tetraploid) 3	1.826
	CNS0095613	Golden flower (tetraploid) 1	1.053
	CNS0095614	Golden flower (tetraploid) 2	0.960
	CNS0095615	Golden flower (tetraploid) 3	0.741
CRA001975	CRR073297	Stem 1	5.241
	CRR073298	Stem 2	5.400
	CRR073299	Stem 3	5.087
	CRR073300	Leaf 1	3.720
	CRR073301	Leaf 2	3.503
	CRR073302	Leaf 3	2.617
	CRR073303	Juvenile bud 1	2.274
	CRR073304	Juvenile bud 2	1.853
	CRR073305	Juvenile bud 3	2.806
	CRR073306	Third green 1	1.530
	CRR073307	Third green 2	1.421
	CRR073308	Third green 3	1.923
	CRR073309	Second white 1	2.773
	CRR073310	Second white 2	1.418
	CRR073311	Second white 3	2.075
	CRR073312	Silver flowering 1	1.454
	CRR073313	Silver flowering 2	1.620
	CRR073314	Silver flowering 3	1.251
	CRR073315	Gold flowering 1	1.676
	CRR073316	Gold flowering 2	2.524
	CRR073317	Gold flowering 3	1.056
	CRR073318	Tawny withering 1	5.991
	CRR073319	Tawny withering 2	3.392
	CRR073320	Tawny withering 3	4.547