Detail information of GWHGAAZE027136


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010060626.19.8005E-177PREDICTED: branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic [Eucalyptus grandis]
COGYP_847315.12E-64class IV aminotransferase
Swissprottr|Q8L493|DAAA_ARATH5E-124D-amino-acid transaminase, chloroplastic {ECO:0000303|PubMed:18318836} (Precursor)
trEMBLtr|A0A059BMH2|A0A059BMH2_EUCGR4E-177Uncharacterized protein {ECO:0000313|EMBL:KCW67412.1}
TAIR10AT5G57850.11E-100D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1528003315281752+
GWHAAZE00000008mRNA1528003315281752+
GWHAAZE00000008exon1528003315280169+
GWHAAZE00000008exon1528103815281752+
GWHAAZE00000008CDS1528003315280169+
GWHAAZE00000008CDS1528103815281752+
Transcript Sequence

Network for GWHGAAZE027136

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01063.20Aminotran_4362631.00E-39
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18482ADCL Folate biosynthesis map00790

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.022
SRR3591706second leaf17.080
SRR3591707mature leaf17.114
SRR3591708Shoot apex26.195
SRR3591709Stem46.971
SRR3591710White floral bud19.323
SRR3591711White flower17.478
SRR3591712Green floral bud23.006
SRR3591713Yellow flower14.523
SRP173429 SRR8316895Juvenile bud stage 22.831
SRR8316896Juvenile bud stage 29.039
SRR8316897Juvenile bud stage 13.688
SRR8316894Third green stage 11.304
SRR8316900Third green stage 28.847
SRR8316901Third green stage 25.193
SRR8316898Complete white stage 7.917
SRR8316899Complete white stage 29.728
SRR8316903Complete white stage 16.333
SRR8316902Silver flowering stage3.540
SRR8316904Silver flowering stage6.725
SRR8316905Silver flowering stage3.394
SRR8316906Gold flowering stage 12.386
SRR8316907Gold flowering stage 15.118
SRR8316908Gold flowering stage 11.274
SRP132670SRR6706286Control20.187
SRR6706287Light intensity 50%22.520
SRR6706288Light intensity 20%24.134
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.115
CNS0095593Slightly white alabastrum(diploid) 224.070
CNS0095594Slightly white alabastrum(diploid) 324.023
CNS0095595Whole white alabastrum(diploid) 220.502
CNS0095596Whole white alabastrum(diploid) 319.209
CNS0095597Whole white alabastrum(diploid) 417.081
CNS0095598Silvery flower (diploied) 128.985
CNS0095599Silvery flower (diploied) 225.094
CNS0095600Silvery flower (diploied) 322.144
CNS0095601Golden flower (diploid) 125.639
CNS0095602Golden flower (diploid) 231.864
CNS0095603Golden flower (diploid) 329.084
CNS0095604Slightly white alabastrum(tetraploid) 123.237
CNS0095605Slightly white alabastrum(tetraploid) 223.440
CNS0095606Slightly white alabastrum(tetraploid) 332.008
CNS0095607Whole white alabastrum(tetraploid) 113.352
CNS0095608Whole white alabastrum(tetraploid) 213.885
CNS0095609Whole white alabastrum(tetraploid) 324.903
CNS0095610Silvery flower (tetraploid) 124.532
CNS0095611Silvery flower (tetraploid) 229.931
CNS0095612Silvery flower (tetraploid) 321.441
CNS0095613Golden flower (tetraploid) 114.838
CNS0095614Golden flower (tetraploid) 222.452
CNS0095615Golden flower (tetraploid) 310.522
CRA001975CRR073297Stem 120.203
CRR073298Stem 217.788
CRR073299Stem 318.723
CRR073300Leaf 118.384
CRR073301Leaf 214.222
CRR073302Leaf 315.349
CRR073303Juvenile bud 120.633
CRR073304Juvenile bud 214.786
CRR073305Juvenile bud 319.916
CRR073306Third green 16.409
CRR073307Third green 25.165
CRR073308Third green 35.264
CRR073309Second white 110.232
CRR073310Second white 24.509
CRR073311Second white 33.699
CRR073312Silver flowering 13.729
CRR073313Silver flowering 25.268
CRR073314Silver flowering 32.918
CRR073315Gold flowering 113.550
CRR073316Gold flowering 215.882
CRR073317Gold flowering 316.114
CRR073318Tawny withering 118.572
CRR073319Tawny withering 222.375
CRR073320Tawny withering 317.760