Detail information of GWHGAAZE027125


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010279077.10PREDICTED: malate dehydrogenase, mitochondrial-like [Nelumbo nucifera]
COGNP_931711.12E-111malate dehydrogenase
Swissprottr|P83373|MDHM_FRAAN0Malate dehydrogenase, mitochondrial (Precursor)
trEMBLtr|I1KDM8|I1KDM8_SOYBN0Malate dehydrogenase {ECO:0000256|RuleBase:RU003405}
TAIR10AT1G53240.11E-152Lactate/malate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1512217815127163+
GWHAAZE00000008mRNA1512217815127163+
GWHAAZE00000008exon1512217815122498+
GWHAAZE00000008exon1512348115123654+
GWHAAZE00000008exon1512376415123932+
GWHAAZE00000008exon1512526215125323+
GWHAAZE00000008exon1512543715125558+
GWHAAZE00000008exon1512599115126108+
GWHAAZE00000008exon1512702315127163+
GWHAAZE00000008CDS1512217815122498+
GWHAAZE00000008CDS1512348115123654+
GWHAAZE00000008CDS1512376415123932+
GWHAAZE00000008CDS1512526215125323+
GWHAAZE00000008CDS1512543715125558+
GWHAAZE00000008CDS1512599115126108+
GWHAAZE00000008CDS1512702315127163+
Transcript Sequence

Network for GWHGAAZE027125

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00056.24Ldh_1_N571993.60E-49
PF02866.19Ldh_1_C2013642.20E-51
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00026MDH2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Citrate cyclemap00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0005975biological_processcarbohydrate metabolic process
GO:0006099biological_processtricarboxylic acid cycle
GO:0019752biological_processcarboxylic acid metabolic process
GO:0006108biological_processmalate metabolic process
GO:0016491molecular_functionoxidoreductase activity
GO:0003824molecular_functioncatalytic activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0030060molecular_functionL-malate dehydrogenase activity
GO:0016615molecular_functionmalate dehydrogenase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf262.506
SRR3591706second leaf159.124
SRR3591707mature leaf80.647
SRR3591708Shoot apex212.464
SRR3591709Stem122.790
SRR3591710White floral bud277.217
SRR3591711White flower274.208
SRR3591712Green floral bud387.306
SRR3591713Yellow flower202.936
SRP173429 SRR8316895Juvenile bud stage 156.486
SRR8316896Juvenile bud stage 213.869
SRR8316897Juvenile bud stage 130.139
SRR8316894Third green stage 113.103
SRR8316900Third green stage 475.146
SRR8316901Third green stage 392.155
SRR8316898Complete white stage 199.534
SRR8316899Complete white stage 449.339
SRR8316903Complete white stage 268.450
SRR8316902Silver flowering stage131.766
SRR8316904Silver flowering stage177.783
SRR8316905Silver flowering stage99.259
SRR8316906Gold flowering stage 289.581
SRR8316907Gold flowering stage 291.665
SRR8316908Gold flowering stage 290.005
SRP132670SRR6706286Control358.091
SRR6706287Light intensity 50%378.630
SRR6706288Light intensity 20%410.752
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1183.722
CNS0095593Slightly white alabastrum(diploid) 2210.693
CNS0095594Slightly white alabastrum(diploid) 3162.369
CNS0095595Whole white alabastrum(diploid) 2205.657
CNS0095596Whole white alabastrum(diploid) 3244.559
CNS0095597Whole white alabastrum(diploid) 4176.722
CNS0095598Silvery flower (diploied) 1143.830
CNS0095599Silvery flower (diploied) 2168.235
CNS0095600Silvery flower (diploied) 3441.776
CNS0095601Golden flower (diploid) 1145.896
CNS0095602Golden flower (diploid) 2329.284
CNS0095603Golden flower (diploid) 3314.690
CNS0095604Slightly white alabastrum(tetraploid) 1252.671
CNS0095605Slightly white alabastrum(tetraploid) 2210.367
CNS0095606Slightly white alabastrum(tetraploid) 3330.739
CNS0095607Whole white alabastrum(tetraploid) 1165.774
CNS0095608Whole white alabastrum(tetraploid) 2183.511
CNS0095609Whole white alabastrum(tetraploid) 3360.156
CNS0095610Silvery flower (tetraploid) 1284.161
CNS0095611Silvery flower (tetraploid) 2273.264
CNS0095612Silvery flower (tetraploid) 3284.298
CNS0095613Golden flower (tetraploid) 1216.469
CNS0095614Golden flower (tetraploid) 2307.950
CNS0095615Golden flower (tetraploid) 3251.596
CRA001975CRR073297Stem 1275.609
CRR073298Stem 2284.485
CRR073299Stem 3346.274
CRR073300Leaf 1395.983
CRR073301Leaf 2424.916
CRR073302Leaf 3555.222
CRR073303Juvenile bud 1652.169
CRR073304Juvenile bud 2618.367
CRR073305Juvenile bud 3716.908
CRR073306Third green 1307.596
CRR073307Third green 2267.434
CRR073308Third green 3237.265
CRR073309Second white 1464.418
CRR073310Second white 2282.586
CRR073311Second white 3232.665
CRR073312Silver flowering 1278.297
CRR073313Silver flowering 2389.247
CRR073314Silver flowering 3292.636
CRR073315Gold flowering 1117.359
CRR073316Gold flowering 2136.911
CRR073317Gold flowering 3138.469
CRR073318Tawny withering 1186.807
CRR073319Tawny withering 2141.537
CRR073320Tawny withering 3172.327