Gene detail

Detail information of GWHGAAZE027123

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285377.1	7.4538E-162	PREDICTED: UBP1-associated protein 2C [Vitis vinifera]
COG	YP_001424629.2	9E-11	glycine-rich RNA-binding protein
Swissprot	tr\|Q9LKA4\|UBA2C_ARATH	1E-127	UBP1-associated protein 2C
trEMBL	tr\|A5ADJ5\|A5ADJ5_VITVI	3E-162	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN66609.1}
TAIR10	AT3G15010.2	6E-88	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	15100017	15105264	+
GWHAAZE00000008	mRNA	15100017	15105264	+
GWHAAZE00000008	exon	15100017	15100734	+
GWHAAZE00000008	exon	15100783	15101025	+
GWHAAZE00000008	exon	15101155	15101385	+
GWHAAZE00000008	exon	15104553	15105264	+
GWHAAZE00000008	CDS	15100017	15100734	+
GWHAAZE00000008	CDS	15100783	15101025	+
GWHAAZE00000008	CDS	15101155	15101384	+
GWHAAZE00000008	three_prime_UTR	15101385	15101385	+
GWHAAZE00000008	three_prime_UTR	15104553	15105264	+

Transcript Sequence
>GWHTAAZE027157 ATGGATGTCACCAAGAAGCGGAAACTAGACGAGAATGGCGTTTTACTACTGGATTCCGACACCAAACTCACCGTTGACGATGCTCGCAAGATCATCGAGTCCTTCACTCACTCACAACTCCTCGAGATCGTCCAAAGCGCCGCTGTTATACACCTCGACGTACTCGACGCCGTCCGATCAATCGCGGATCAAGACCCCTCCCGGCGCAAGCTCTTCATACGAGGCCTCGGGTGGGACACCACCACCGACAATCTCCGCTCTCTCTTCTCCGCTTACGGCGAATTAGAAGAAGCCATTGTAATACTTGATAAAGCCACTGGGAAAAGCAAGGGTTTTGGTTTTATTACTTTTAAGCATATTGATGGGGCTTTGTTGGCATTGAAAGAACCTAGTAAGAAAATTGACGGTAGAATGACTGTAACGCAGCTTGCCGCGGGCCCTACGGTTAATTCTCAGGCAATGGATGTGTCTGAGAGGAAGATATATGTAGGGAATGTCCCATCTGATATGGTGGCGGAGAGGTTGTTGGCGCATTTTTCGTCCTACGGTGAGATTGAAGAAGGTCCTTTAGGGTTTGATAAGGCTACGGGGAAGTTTAAGGGGTATGCGCTTTTTGTGTATAAGAATGCTGAGGCTGCTAGGGCTTCGTTGGTTGATCCGATTAAGAATATTGATGGGCAGCAATTGAATTGCAAATTGGCGAATGATGGGAAGAGAGATGGGGCTCCGGTGGAGCCTCATGGTAGTAATGGGAATGGAATTGGTCCAATTGGATTGCATTCCCAGGTCTCAATGCCATCACAGTATGGTGGGGTTGGTGGTCCGAATGGGATTTCATCTTATGGTGGGTTTTCCAGTGGACTACCAGGACCGTCTCCACTAAGTCATCATCCTATGAATTCTTCATCCTCTTCCCTGGGAGGCGGCCCAGGTCAAACGCCCTCTTCTCTGGGTGCTAGTGGCGCACTGGGCAGTGCTGGCATTGGATTTGGTAGTTCTGGTAGAGGCTCTTCACTTTACGGCTTGCCACCGAGCTCAATGGGAATGCCTTCTGGTGGTTATACCGAGAGCACCCAGTATAGTTTGTCTTCGTCTGGGTTTCAAAGCCAACACCACCAAACAGAAGGACCACCTCCTGTACCGAGAATTCCACCCGGGGGAATGTTCCATGGCGGTCCCCCTTATTACTGAGGTGTATGACAGCTTTGTTGGACGCAGTTGCTTTTAGTGGTTCTGGTGATTATGCAGACAATATGAAACTTGTGGAATTGATGAATTTGATTTGCTGTCTTTGGCGTCATCTTCACTTCTTCTGCGCTTTTAGATTTGGTGGTTGCTTTCTTATATGGTAGTTAAAAGTGACTTGTTAGTTTAGCTTTTTGTACCTCTTATCAGCAAACGATATACCGAACTTCCTTGTTTTTGTTTTTGAAACTTAGATAAATAAAAATTTACTAGTTTGAGTTTGACAGTGATTTGCCCAAATTTATGCTCATGTGTTTTGTTTCTGTTGCTTGGTGTTTATCATGGCTTGTTATTCGTCCTCTTTGATGGCTGGCTTAGTTTGCTTCTTATATTTGTTCATGATGAAGAGCATGAGATGTTTGCATTGGGGCAGTTGTTTACAAGTTGGATAGTTTGCATTGGGGCAGTTGTTGACCATCTATGAAAATGCTTATCATGATGTATATTGTATTTTTATATATGCGACTCGTAGTTCATTCCACATCTCTGCCTACTTGATTGACACCGTTTACTCCTTTGAGGTTTTGGTTATTCAAGGTCTGGTTCATGTTAGGGTTGAAAAGGTTTCAGACCGATTAGATCAAATCGGTTCTAGGTACTGTACAGAACCCCAGTAACTTATCATTAAAACTATTTTAGATGTACATGGATACATTTGA

Network for GWHGAAZE027123

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	71	137	1.80E-15
PF00076.23	RRM_1	161	217	1.10E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.270
	SRR3591706	second leaf	11.925
	SRR3591707	mature leaf	12.272
	SRR3591708	Shoot apex	19.972
	SRR3591709	Stem	16.570
	SRR3591710	White floral bud	17.411
	SRR3591711	White flower	22.849
	SRR3591712	Green floral bud	20.565
	SRR3591713	Yellow flower	11.274
SRP173429	SRR8316895	Juvenile bud stage	12.565
	SRR8316896	Juvenile bud stage	19.343
	SRR8316897	Juvenile bud stage	8.737
	SRR8316894	Third green stage	7.289
	SRR8316900	Third green stage	20.963
	SRR8316901	Third green stage	19.863
	SRR8316898	Complete white stage	6.758
	SRR8316899	Complete white stage	27.478
	SRR8316903	Complete white stage	12.755
	SRR8316902	Silver flowering stage	7.206
	SRR8316904	Silver flowering stage	10.398
	SRR8316905	Silver flowering stage	4.573
	SRR8316906	Gold flowering stage	12.157
	SRR8316907	Gold flowering stage	11.689
	SRR8316908	Gold flowering stage	12.673
SRP132670	SRR6706286	Control	26.771
	SRR6706287	Light intensity 50%	27.466
	SRR6706288	Light intensity 20%	28.873
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.084
	CNS0095593	Slightly white alabastrum(diploid) 2	13.572
	CNS0095594	Slightly white alabastrum(diploid) 3	12.333
	CNS0095595	Whole white alabastrum(diploid) 2	10.496
	CNS0095596	Whole white alabastrum(diploid) 3	9.022
	CNS0095597	Whole white alabastrum(diploid) 4	7.961
	CNS0095598	Silvery flower (diploied) 1	15.652
	CNS0095599	Silvery flower (diploied) 2	11.974
	CNS0095600	Silvery flower (diploied) 3	21.191
	CNS0095601	Golden flower (diploid) 1	11.319
	CNS0095602	Golden flower (diploid) 2	17.708
	CNS0095603	Golden flower (diploid) 3	18.036
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.149
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.439
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.429
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.924
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.957
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.537
	CNS0095610	Silvery flower (tetraploid) 1	14.943
	CNS0095611	Silvery flower (tetraploid) 2	14.901
	CNS0095612	Silvery flower (tetraploid) 3	10.959
	CNS0095613	Golden flower (tetraploid) 1	4.330
	CNS0095614	Golden flower (tetraploid) 2	9.756
	CNS0095615	Golden flower (tetraploid) 3	9.842
CRA001975	CRR073297	Stem 1	15.157
	CRR073298	Stem 2	16.563
	CRR073299	Stem 3	15.781
	CRR073300	Leaf 1	17.036
	CRR073301	Leaf 2	14.898
	CRR073302	Leaf 3	12.069
	CRR073303	Juvenile bud 1	13.228
	CRR073304	Juvenile bud 2	10.731
	CRR073305	Juvenile bud 3	15.209
	CRR073306	Third green 1	6.038
	CRR073307	Third green 2	6.279
	CRR073308	Third green 3	7.344
	CRR073309	Second white 1	5.970
	CRR073310	Second white 2	5.158
	CRR073311	Second white 3	3.409
	CRR073312	Silver flowering 1	4.596
	CRR073313	Silver flowering 2	5.423
	CRR073314	Silver flowering 3	4.303
	CRR073315	Gold flowering 1	8.450
	CRR073316	Gold flowering 2	11.615
	CRR073317	Gold flowering 3	9.451
	CRR073318	Tawny withering 1	12.685
	CRR073319	Tawny withering 2	10.387
	CRR073320	Tawny withering 3	12.352