Gene detail

Detail information of GWHGAAZE027120

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05997.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	0.0000004	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|A0A068UCJ0\|A0A068UCJ0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313\|EMBL:CDP05997.1}
TAIR10	AT3G14980.1	9E-147	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	15039046	15045730	-
GWHAAZE00000008	mRNA	15039046	15045730	-
GWHAAZE00000008	exon	15043883	15045730	-
GWHAAZE00000008	exon	15040983	15041106	-
GWHAAZE00000008	exon	15040461	15040546	-
GWHAAZE00000008	exon	15040102	15040343	-
GWHAAZE00000008	exon	15039899	15039985	-
GWHAAZE00000008	exon	15039607	15039776	-
GWHAAZE00000008	exon	15039046	15039245	-
GWHAAZE00000008	CDS	15043883	15045730	-
GWHAAZE00000008	CDS	15040983	15041106	-
GWHAAZE00000008	CDS	15040461	15040546	-
GWHAAZE00000008	CDS	15040102	15040343	-
GWHAAZE00000008	CDS	15039899	15039985	-
GWHAAZE00000008	CDS	15039607	15039776	-
GWHAAZE00000008	CDS	15039046	15039245	-

Transcript Sequence
>GWHTAAZE027154 ATGATGTTATTCAGCAAACAGATTGAGAGTTTACATGATGATGGTTTTGAGGGATCAGTAGATGAGCACCGTATTTTTAGAGAGGTGTTCTTTGGAAACGACGCCATTAGTAGTAGTAAAAGGTGTCGTGTTAATGGAGCAATTAACTTTGAAAGTGACTATAGTAAACACATAGATTTGTCGTTTTGCCCAAACAGTGGAAACTTAGTAAGTAAGAACTCTTCTTGTGTTAAACGAATGAAGCTATCTGTTGACAAGCTTTCTAATACCAAGCCTTATTTGGAAAAGGTTACAAATTCAACATATCCATCGGGGTTAGTTGTTTTTGATACTTCTGAACCAGCCTCAAATTCTCTTTATCCAATTGTAACCTGTCGATTGGTTGAGTCATCTAGCGAGGGTGTTATATCAAGTTGCTATCTGCTAAAACAACTTGCTGTGATGGACGGAGGAGGTGATATACGTGACAGTTTAGATGGAAGTAAAGCTACTGCTTCACCTGTTTCTCAAGAGAGCTTCGGAACCAAGTTTTTGGTTTCCAATAAGTCCGAATCTCTTCGATCTACAAACAAAAGATGGAATAGATCCACCTTTGTGGAACTGGATGAAGATGAAATGACAATGCCTAGAGATTCCTCAAATGATCCTCGTCGTATTCTTCGTTACCACATTAATCGCTTGTTGAGAGCAATGGGATGGGAGATAGGGAAGCGTAAACGAACCGATAAACATAAAGGGATCGGCGAATATATTTACCGTTCACCAGAGGGAAGACCAATTCGTGAATTTAGCAGAGTGTGGAATTTGTGTGGAAAGTGTTTATTTGACGATGTGGAAAATGTTCTGCAGGAAAGTGATGGTAAGCACTGGACTGATATGACTCAGTTCTTGTCTGATCTATCAAACGCAGTTACAGAGATCGAAGGACTTGGTGATTTGGGAACAACCACTGTGTTAGCTCATTGTTGGTATCTTTTAGATCCCTTTGCAAATGTGGTGTTCATTGAGAAGAAGATTTGCTCGCTGAAAGCAGGCAAAGTAGTGAAAGCAAAGAGAAGTCTCATTATTGATGAATTCACCAAGCATGATTATGGCATTAAGGACCCAAAGGGGTTCAATTTTATGAACATTCATGATGAAGCCCCTATACATGTGAAGAGCAAGCCTTTGGATTCTCAAACTTGGAGAAATGGCATTAACTGGAAAAAGCCTGAAAGCCAAGACTGGCAGGAGAAATCAGTAACTTGCCATCTCAAGGATGACGATCTCTTGATTTCAGCTATCATAAGAAACAAAAACTTCAAAACGATATCTTGCAAATCAAAAGCTCTAAGAAAGCGCAAGAGCCAAAAGGGAAGCTGCAGGCTTCTACCACGAAGCCTTAACAACGGTGGTAAACATTGCACGGAAGGGAAATGGTTTGCTGTCGGTGAAAGGACGGTATTGTCCTTGTTGATTAATTCTGGGGTTGTTTCTCTTAATGAAGTGATCCAATACCGGAATCCAAAGGATGATTCTGTGGTGAAAGATGGGCTAATTACTTTGGATGGGATTTTGTGTAGGTGTTGTAATAAGGTACTTTCTGTTTCTGAGTTTAAGAGTCATGCTGGTTACAGATTGAACCGTCCATGTTTGAATCTTTTTATGGAGTCTGGTAAGCCATTCACCTTATGCCAGCTGGAGGCTTGGTCAGCTGAATATAGGGCCAGGAAAAGTGCTACGCGAACCATACAAGTTGATGAGATGGATCAAAACGATGATATTTGTGGACTGTGTGGTGATGGAGGTGAGTTGATTTGTTGCGATAACTGTCCATCGACATTTCATCAGGCATGCTTGTATGCTCAGGAGCTACCTGAAGGGAGTTGGTATTGTTCAGACTGCACTTGCCGTATGTGTGGGGATTTGGTCAATGATAAAGAGGCTTTAAAATCCCCTGGTGCACTAAAATGTTTGCAGTGTGAGCATAAATATCATGAAACCTGCCTGGAAAAGGGTATAAAAAGAGTTGCAGCTTCTGATAATAATGCTTGGTTTTGCTGCGACAGCTGTAAGGAGGTTTACTCCAGGGTCCACTCTCGTATTGGAATTACGAATCATATGTCTGATGGCTTCTCATGGACACTTCTGAGGTGTAGTGATCAAAAAGTACAATCTGCTGCTCAGAGATTTGTTGCATGGAAGGCAGAATGCAACTTGAAGTTAGCCGTCGCACTTACAATCATGGAGGAGTGCTTTCTCCCCATGGTGGACCCAAGAACTGGTATAGACATGATACCTCATATTGTATACAACTGGGGATCTGAATTTGCGCGGCTAAACTACCAAGGATTCCAGACTGTAGTCTTGGAGAAGGATGATGTTCTAATCTCCGTAGCATCAGTCAGAATCCATGGAGTAAAAGTTGCAGAGATGCCTCTCGTTGCAACATGCAGCAAGTATCGCCGCCAGGGGATGTGTCGGCGCCTAATGAATGCCGTCGAAGAGGTAAATCTTCCATGTTTGTGGCTATGCAAGTGGCAAATCTTGGATTCTACTTTCATAAAATCATCACTGGATGCTGAGATCTTTCAAGGTCGAAAAGCTTGTGATATCAGCCCTCCCGAGCTTACTGGAGACATGGACGGTTGGATTCGGGTTCGAACCCTTGGAAGAAAGCGAGAGGCGGAGTCTCAGCGGCAACACCAACCTTATGGTGTTTCCTGGGACAATCTGGCTGAAGAAGTCCCTCCACTTAAAATCCCTACCAAACTCTGA

Network for GWHGAAZE027120

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16135.6	TDBD	511	562	1.40E-17
PF00628.30	PHD	588	630	4.20E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.330
	SRR3591706	second leaf	3.398
	SRR3591707	mature leaf	4.790
	SRR3591708	Shoot apex	7.518
	SRR3591709	Stem	5.877
	SRR3591710	White floral bud	8.247
	SRR3591711	White flower	9.497
	SRR3591712	Green floral bud	5.712
	SRR3591713	Yellow flower	8.366
SRP173429	SRR8316895	Juvenile bud stage	3.100
	SRR8316896	Juvenile bud stage	3.892
	SRR8316897	Juvenile bud stage	1.741
	SRR8316894	Third green stage	2.403
	SRR8316900	Third green stage	5.186
	SRR8316901	Third green stage	4.626
	SRR8316898	Complete white stage	1.756
	SRR8316899	Complete white stage	5.514
	SRR8316903	Complete white stage	3.430
	SRR8316902	Silver flowering stage	2.411
	SRR8316904	Silver flowering stage	4.974
	SRR8316905	Silver flowering stage	1.708
	SRR8316906	Gold flowering stage	6.163
	SRR8316907	Gold flowering stage	5.054
	SRR8316908	Gold flowering stage	5.900
SRP132670	SRR6706286	Control	3.152
	SRR6706287	Light intensity 50%	3.140
	SRR6706288	Light intensity 20%	3.285
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.273
	CNS0095593	Slightly white alabastrum(diploid) 2	4.261
	CNS0095594	Slightly white alabastrum(diploid) 3	3.782
	CNS0095595	Whole white alabastrum(diploid) 2	3.597
	CNS0095596	Whole white alabastrum(diploid) 3	3.031
	CNS0095597	Whole white alabastrum(diploid) 4	3.227
	CNS0095598	Silvery flower (diploied) 1	6.986
	CNS0095599	Silvery flower (diploied) 2	3.253
	CNS0095600	Silvery flower (diploied) 3	6.548
	CNS0095601	Golden flower (diploid) 1	4.864
	CNS0095602	Golden flower (diploid) 2	5.933
	CNS0095603	Golden flower (diploid) 3	5.861
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.262
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.120
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.101
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.401
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.413
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.571
	CNS0095610	Silvery flower (tetraploid) 1	6.250
	CNS0095611	Silvery flower (tetraploid) 2	5.708
	CNS0095612	Silvery flower (tetraploid) 3	7.350
	CNS0095613	Golden flower (tetraploid) 1	2.986
	CNS0095614	Golden flower (tetraploid) 2	4.812
	CNS0095615	Golden flower (tetraploid) 3	4.171
CRA001975	CRR073297	Stem 1	7.128
	CRR073298	Stem 2	5.754
	CRR073299	Stem 3	4.399
	CRR073300	Leaf 1	4.746
	CRR073301	Leaf 2	4.582
	CRR073302	Leaf 3	3.568
	CRR073303	Juvenile bud 1	3.317
	CRR073304	Juvenile bud 2	1.397
	CRR073305	Juvenile bud 3	3.777
	CRR073306	Third green 1	2.866
	CRR073307	Third green 2	2.052
	CRR073308	Third green 3	2.462
	CRR073309	Second white 1	3.094
	CRR073310	Second white 2	3.942
	CRR073311	Second white 3	5.273
	CRR073312	Silver flowering 1	3.651
	CRR073313	Silver flowering 2	1.579
	CRR073314	Silver flowering 3	1.950
	CRR073315	Gold flowering 1	2.522
	CRR073316	Gold flowering 2	5.603
	CRR073317	Gold flowering 3	1.909
	CRR073318	Tawny withering 1	3.733
	CRR073319	Tawny withering 2	4.829
	CRR073320	Tawny withering 3	4.459