Gene detail

Detail information of GWHGAAZE027112

Functional Annotation

Database	Orthologs	Annotation
Nr	KHG02548.1	Phosphoenolpyruvate carboxylase, housekeeping isozyme [Gossypium arboreum]
COG	YP_008045770.1	phosphoenolpyruvate carboxylase
Swissprot	tr\|Q9FV65\|CAPPC_FLATR	Phosphoenolpyruvate carboxylase 2
trEMBL	tr\|A9QED9\|A9QED9_GOSHI	Phosphoenolpyruvate carboxylase {ECO:0000313\|EMBL:ABV80356.1}
TAIR10	AT3G14940.1	phosphoenolpyruvate carboxylase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14894241	14899985	+
GWHAAZE00000008	mRNA	14894241	14899985	+
GWHAAZE00000008	exon	14894241	14894411	+
GWHAAZE00000008	exon	14895274	14895665	+
GWHAAZE00000008	exon	14895774	14895858	+
GWHAAZE00000008	exon	14896020	14896242	+
GWHAAZE00000008	exon	14896620	14896723	+
GWHAAZE00000008	exon	14896806	14896893	+
GWHAAZE00000008	exon	14897074	14897228	+
GWHAAZE00000008	exon	14897436	14897629	+
GWHAAZE00000008	exon	14897689	14898433	+
GWHAAZE00000008	exon	14898757	14899143	+
GWHAAZE00000008	exon	14899303	14899985	+
GWHAAZE00000008	CDS	14894241	14894411	+
GWHAAZE00000008	CDS	14895274	14895665	+
GWHAAZE00000008	CDS	14895774	14895858	+
GWHAAZE00000008	CDS	14896020	14896242	+
GWHAAZE00000008	CDS	14896620	14896723	+
GWHAAZE00000008	CDS	14896806	14896893	+
GWHAAZE00000008	CDS	14897074	14897228	+
GWHAAZE00000008	CDS	14897436	14897629	+
GWHAAZE00000008	CDS	14897689	14898433	+
GWHAAZE00000008	CDS	14898757	14899143	+
GWHAAZE00000008	CDS	14899303	14899602	+
GWHAAZE00000008	three_prime_UTR	14899603	14899985	+

Transcript Sequence
>GWHTAAZE027146 ATGGCAACTAGTCGGAAGCTAGAGAAACTAGCGTCGATCGATGCACAGCTGAGGCTATTGGTACCAGGGAAAGTGTCAGAGGATGATAAGCTAGTGGAGTATGATGCTTTGCTTTTGGATCGCTTCCTTGATATTCTTCAGGATTTACATGGGGAAGATCTCAAGGAAACGGTTCAAGAGTGTTATGAGCTTTCCGCCGAGTATGAAGGAAAGCGTGATCCTCAGAAGCTGGAGGAGCTTGGAAGTGTATTAACAAGCTTGGATCCGGGGGACTCCATTGTTATTGCAAAAGCCTTTTCTCACATGCTTAATTTGGCCAACCTTGCCGAGGAGGTTCAGATTGCTTACCGTCGACGTATCAAGTTGAAAAAAGGGGTTTTCACTGATGAGAGCAATGCAACAACTGAATCCGACATTGAAGAAACTTTCAAGAAACTTGTGGTGCAATTGAAGAAGTCACCTGAAGAAGTTTTCGATGCTCTGAAGAACCAAACCGTTGATCTTGTGTTTACTGCTCATCCTACTCAATCAGTCCGTAGATCTTTGCTTCAGAAGCATGGAAGGATAAGAGATTGTTTAGCTCAGTTATATGCCAAAGACATTACTCCTGATGATAAGCAGGAGCTTGATGAGGCTTTACAGAGGGAAATCCAAGCTGCTTTCCGTACCGATGAGATACGAAGGACACAACCGACCCCACAAGATGAAATGAGGGCTGGAATGAGTTACTTCCATGAAACAATCTGGAAAGGGGTTCCTAAGTTTTTGCGTCGTGTTGACACGGCTCTCAAGAACATAGGGATAAATGAACGTGTTCCATACAATGCCCCTCTCATTCAGTTCTCTTCCTGGATGGGTGGTGATCGTGACGGTAATCCAAGGGTAACTCCTGAGGTGACAAGGGATGTGTGCTTATTGGCCCGAATGATGGCTGCTAACTTGTACTTTTCCCAGATAGAGGATCTCATGTTTGAGATGTCTATGTGGCGTTGTAGTGATGAGCTTCGTGCCCGAGCAGATGAACTCCACCAATCAACGAGGAGAGATGCAAAACACTACATAGAGTTTTGGAAGCAGGTGCCCCCAAGTGAACCCTACCGTGTTATTCTTGGCGATGTGAGAGATAAGTTGTATCACACCCGTGAACGTTCTCGTCATTTACTAGCCCATGATATTTCTGACATTCCAGAGGAGTCAACTTACACCAATGTTGAGCAGTTCTTGGAACCCCTTGAACTATGCTACAGATCTCTATGTGCTTGTGGAGACCGGCCCATTGCTGACGGCAGCCTTCTTGATTTTCTAAGGCAAGTTTCCACCTTTGGCCTGTCACTTGTGAGACTCGATATAAGGCAAGAGTCTGACAGGCACACTGATGTCTTAGACGCCATTACCAAGCATTTAGAAATTGGGCAAACGCCCACTCTTTGGCCCGATCTTCCGAAAACCGAAGAAATTGCGGACGTTTTAGACACATTCCACGTCATAGCAGAACTTCCACCAGATTGCTTTGGAGCTTACATCATCTCGATGGCCACATCACCTTCCGATGTGCTCGCAGTTGAGCTTCTACAACGCGAATGCCATGTAAACCAACCATTAAGGGTCGTTCCACTTTTTGAGAAACTCGCTGACCTGGATGCCGCTCCGTCTGCTATGGCCCGTCTATTTTCAATTGACTGGTACAGAAATAGGATCGACGGTAAGCAAGAGGTCATGATCGGGTACTCGGATTCTGGCAAGGATGCCGGTCGGCTATCAGCGGCCTGGCAGCTATATAAGGCTCAAGAGGAGCTTATAAACGTAGCTAAGGACTTTGGCGTGAAGCTAACTATGTTCCATGGTCGAGGTGGGACTGTTGGCAGGGGAGGTGGCCCCACCCATCTTGCTATACTTTCTCAACCGCCCGATACGATCCATGGGTCGCTCCGTGTTACAGTTCAGGGAGAAGTTATAGAGCAGTCATTTGGGGAGGAACATTTGTGCTTTAGGACGCTTCAGCGTTTCTGTGCTGCTACACTTGAGCATGGGATGCACCCACCGGTCGCACCGAAACCAGAGTGGCGTGCCCTTATGGATGAAATGGCTGTTGTTGCTACTGAGGAATACCGTTCGATAGTTTTCAAAGAACCACGATTTGTCGAGTATTTCCGCCTTGCTACACCAGAGTTAGAGTATGGTCGGATGAATATTGGGAGTCGTCCATCAAAACGAAAGCCAAGCGGTGGCATTGAATCTCTAAGGGCAATTCCGTGGATCTTCGCGTGGACTCAAACTAGGTTTCATCTCCCGGTCTGGCTTGGCTTTGGAGGAGCTTTCAAAAAAGCCATTCAGAAGGACATTAAGAATCTCCTCATGCTGCAGGAGATGTACAATGAATGGCCCTTCTTTAGGGTCACCATTGATTTGATTGAGATGGTGTTTGCTAAGGGTGACCCCGGTATTGCTGCCTTGAACGACAAGCTCCTTGTTTCAGAAGATTTGTGGGCATTTGGAGAGCAATTGAGGGACGACTATGAGGAAACAAAGAAGCTTATCCTTCAGATTGCTGGACATAGGGATCTTCTTGAAGGAGATCCATACTTGAAGCAACGGCTAAGATTGCGTGATTCCTACATCACAACCTTGAATGTGTGCCAAGCGTACACGCTAAAACGTATCCGTGACCCTAATTATCATGTGAAGTTGAGGCCCCACATTTCGAAAGACTACATGGAAGCAGCAAGCGAACGAGCTGCGGAGTTGGTAAAGTTGAACCCCACAAGTGAGTATGCCCCTGGTTTGGAGGATACCCTCATCTTGACCATGAAGGGCATTGCGGCTGGGATGCAGAACACCGGTTAATTATTCGTCTGTCTTTGGTCTTTTAGCCCTTAATTGAATAGATTTCGCCTCGGAGAAATATGATTTATTTGAGCTATACCGTTACTATCCTACTAGGAAATTTCGGTGATCTTTGCACACGAAACGTTTCTTTTGTGTATTGATCGTCTTGTTGTGCTCACCTACTAGTGGAACTAGCAGTGGGACTATGTTGCTTTCACAATAGTATATTAAATAATTATACTTGGAGACCATTGGGGCCTTTAATTTGATAATTTTTCTAGTAAATTTTTGTCAGTTTGGTATGTAAAGTTTTGTAACATTTTAATTTCGGTAGTACTGTTAGTTTACGAGGACGTACCTTTGGTTACGCAAAACAGAAGATTCAAAAGGTACAACTAAAA

Network for GWHGAAZE027112

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00311.18	PEPcase	164	471	4.70E-101
PF00311.18	PEPcase	474	947	1.60E-184

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01595	ppc	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pyruvate metabolism	map00620
		Carbon fixation in photosynthetic organisms	map00710
		Carbon fixation pathways in prokaryotes	map00720
		Methane metabolism	map00680

Gene Ontology

GO term	Ontology	Name
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0015977	biological_process	carbon fixation
GO:0008964	molecular_function	phosphoenolpyruvate carboxylase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.058
	SRR3591706	second leaf	31.462
	SRR3591707	mature leaf	27.025
	SRR3591708	Shoot apex	52.966
	SRR3591709	Stem	45.249
	SRR3591710	White floral bud	37.766
	SRR3591711	White flower	64.589
	SRR3591712	Green floral bud	42.339
	SRR3591713	Yellow flower	43.818
SRP173429	SRR8316895	Juvenile bud stage	45.113
	SRR8316896	Juvenile bud stage	41.285
	SRR8316897	Juvenile bud stage	22.115
	SRR8316894	Third green stage	18.713
	SRR8316900	Third green stage	48.328
	SRR8316901	Third green stage	45.325
	SRR8316898	Complete white stage	18.496
	SRR8316899	Complete white stage	54.474
	SRR8316903	Complete white stage	28.955
	SRR8316902	Silver flowering stage	27.653
	SRR8316904	Silver flowering stage	33.811
	SRR8316905	Silver flowering stage	18.424
	SRR8316906	Gold flowering stage	42.483
	SRR8316907	Gold flowering stage	55.899
	SRR8316908	Gold flowering stage	54.663
SRP132670	SRR6706286	Control	47.958
	SRR6706287	Light intensity 50%	57.057
	SRR6706288	Light intensity 20%	58.011
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.572
	CNS0095593	Slightly white alabastrum(diploid) 2	44.855
	CNS0095594	Slightly white alabastrum(diploid) 3	43.900
	CNS0095595	Whole white alabastrum(diploid) 2	34.492
	CNS0095596	Whole white alabastrum(diploid) 3	26.005
	CNS0095597	Whole white alabastrum(diploid) 4	28.754
	CNS0095598	Silvery flower (diploied) 1	76.675
	CNS0095599	Silvery flower (diploied) 2	34.147
	CNS0095600	Silvery flower (diploied) 3	57.273
	CNS0095601	Golden flower (diploid) 1	31.616
	CNS0095602	Golden flower (diploid) 2	52.060
	CNS0095603	Golden flower (diploid) 3	50.851
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.619
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.787
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.505
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.100
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.066
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.319
	CNS0095610	Silvery flower (tetraploid) 1	38.449
	CNS0095611	Silvery flower (tetraploid) 2	41.987
	CNS0095612	Silvery flower (tetraploid) 3	31.406
	CNS0095613	Golden flower (tetraploid) 1	17.513
	CNS0095614	Golden flower (tetraploid) 2	31.132
	CNS0095615	Golden flower (tetraploid) 3	28.370
CRA001975	CRR073297	Stem 1	67.061
	CRR073298	Stem 2	60.233
	CRR073299	Stem 3	64.430
	CRR073300	Leaf 1	68.895
	CRR073301	Leaf 2	75.500
	CRR073302	Leaf 3	53.628
	CRR073303	Juvenile bud 1	65.136
	CRR073304	Juvenile bud 2	50.529
	CRR073305	Juvenile bud 3	95.857
	CRR073306	Third green 1	35.317
	CRR073307	Third green 2	26.264
	CRR073308	Third green 3	34.886
	CRR073309	Second white 1	47.123
	CRR073310	Second white 2	28.837
	CRR073311	Second white 3	28.856
	CRR073312	Silver flowering 1	31.118
	CRR073313	Silver flowering 2	34.579
	CRR073314	Silver flowering 3	23.904
	CRR073315	Gold flowering 1	28.799
	CRR073316	Gold flowering 2	48.218
	CRR073317	Gold flowering 3	47.251
	CRR073318	Tawny withering 1	54.892
	CRR073319	Tawny withering 2	64.073
	CRR073320	Tawny withering 3	44.299