Gene detail

Detail information of GWHGAAZE027105

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011098213.1	0	PREDICTED: anaphase-promoting complex subunit 6 [Sesamum indicum]
COG	YP_007149216.1	4E-13	tetratricopeptide repeat protein
Swissprot	tr\|B3DNN5\|CDC16_ARATH	0	Anaphase-promoting complex subunit 6
trEMBL	tr\|F6H2M3\|F6H2M3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46241.1}
TAIR10	AT1G78770.1	0	anaphase promoting complex 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14795373	14804993	+
GWHAAZE00000008	mRNA	14795373	14804993	+
GWHAAZE00000008	exon	14795373	14795663	+
GWHAAZE00000008	exon	14797095	14797295	+
GWHAAZE00000008	exon	14798132	14798205	+
GWHAAZE00000008	exon	14798789	14798828	+
GWHAAZE00000008	exon	14798992	14799037	+
GWHAAZE00000008	exon	14799361	14799440	+
GWHAAZE00000008	exon	14799970	14800151	+
GWHAAZE00000008	exon	14800253	14800378	+
GWHAAZE00000008	exon	14800639	14800713	+
GWHAAZE00000008	exon	14800914	14801039	+
GWHAAZE00000008	exon	14801185	14801254	+
GWHAAZE00000008	exon	14801562	14801632	+
GWHAAZE00000008	exon	14802174	14802287	+
GWHAAZE00000008	exon	14802794	14802893	+
GWHAAZE00000008	exon	14803927	14803962	+
GWHAAZE00000008	exon	14804883	14804993	+
GWHAAZE00000008	CDS	14795373	14795663	+
GWHAAZE00000008	CDS	14797095	14797295	+
GWHAAZE00000008	CDS	14798132	14798205	+
GWHAAZE00000008	CDS	14798789	14798828	+
GWHAAZE00000008	CDS	14798992	14799037	+
GWHAAZE00000008	CDS	14799361	14799440	+
GWHAAZE00000008	CDS	14799970	14800151	+
GWHAAZE00000008	CDS	14800253	14800378	+
GWHAAZE00000008	CDS	14800639	14800713	+
GWHAAZE00000008	CDS	14800914	14801039	+
GWHAAZE00000008	CDS	14801185	14801254	+
GWHAAZE00000008	CDS	14801562	14801632	+
GWHAAZE00000008	CDS	14802174	14802287	+
GWHAAZE00000008	CDS	14802794	14802893	+
GWHAAZE00000008	CDS	14803927	14803962	+
GWHAAZE00000008	CDS	14804883	14804993	+

Transcript Sequence
>GWHTAAZE027139 TCTTCGTCATTCAAAAATCCCAATAAAACCAAACTTTTATCAAAGATGAGGGAAGAAGGAGTAGAAAAGCTGAGAGGTGTGGTTAGGGACTGTGTGAGCAAGCACTTGTACTCCTCGGCGATTTTCTTCGCCGACAAAGTCGCTGCACTCACATCGGATCCCGCCGATATATATATGCAGGCACAGGCTCTATTCCTCGGCCGCCACTACCGCCGTGCTTTTCATCTCCTCAACGCTTCCCAAATCGTCCTTCGTGATCTCCGGTTCCGCTATCTCGCCGCCAAATGCCTCGAAGAACTGAAGGAATGGGATCAATGTCTACTGATGCTCGGTGAAGCTAAAGTGGATGAAAATGGAAATGTAAGTGACATAAAGGATTACAATGCCATGTACTTGGATAAAGATGGGGAAGACCGCGAAATCAATGTAAGTTTTCTTCATTTTATAGTTTTTGACAGTGACCTGCAATCGTACATACGTAGTTACGTACATATTTCCTCTGCAATATGCTTTCTAAGAGGCAAGGCATATGAAGCTCTGGAAAATCGTGCCCATGCTCGACAATGGTACAAAGCTGCTATCAGAGCTGATCCTTTGTGTTACGAGGCATTGGAACGTCTTATTGAGAATCACATGCTCACAAGTGAAGAAGAGACAAGTCTACTTTCGTCACTGCAATTTGCTCCCGAAGATGATTGGATATCTACATTTTACTCATGTTTGATAAAGAAGTATGATAAAGAAAATATTGTTGAAGGCAAATTCAGAGAACTGGAACAAGAAGATTTGAAGACAGATACTTCTAACCACTCCTTAATATGTACACTGAAAAACAACACTGATCTTTTGGCCTGCAAAGCTGAATACTACCATCAATGTGGTGAATATCAGAAATGCTTTGAACTGACTTCAGTATTGCTTGAGAAGGATCCATTCCATCTAAAATGTACCTTGGTGCATTTAGCTGCTGCTATGGAGCTTGGACATTCAAATGAGCTATATCTTATGGCTTGCAACTTGGTCAAGGACTATCCTCAGAAGGCTCTGTCATGGTTTGCAGTTGGTTGTTACTACTTTTGTATCAAGAAATATGATCAATCACGGCGATACTTTAGCAAGGCTACGAGTCTAGATGGAACATTTCCACCAGCTTGGATAGGTTGTGGGAATGCTTATGCGGCTCAAGAAGAAGGCGACCAAGCAATGTCTGCTTATCGTACTGCTGCTCGTTTGTTTCCTGGGTGTCACTTACCAGCTCTGTACATTGGGATGGAATACATGCGAACCCACAGCTTCAAACTTGCTGAGCAGGCGAAGTCAACATGCCCGTCAGATCCACTTGTATATAACGAACTTGGAGTTGTTGCTTATCATATGAAGGAGTATAAAAGGGCTGTGTGGTGGTTTGAGAAAACGCTGGCTCATGTTACATCCTGTTTAAGTGAAATGTGGGAACCAACTGTGGTCAATCTTGCTCACGCATTAAGAAAGTTAAAGAGGTACAGTGAGGCAATTGCATACTACGAAAAAGCACTTGCACTATCAACAAGAAGCCTGAGTACCTATGCAGGTCTTGCATACACTTACCATTTGCAGGACAATTACACTGCCGCCATCTCATACTATCACAAGGCTTTATGGCTGAAACCCGATGACCAGTTCTGCACAGAAATGTTAACCTTGGCTCTTGTAGATGAAAGCCATTCTGGCGTCTATCCAAAAACGGAATCTCATCAAGGATAG

Network for GWHGAAZE027105

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12895.8	ANAPC3	34	112	4.80E-17
PF13181.7	TPR_8	169	198	0.0056
PF13424.7	TPR_12	489	546	1.90E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03353	APC6, CDC16	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.766
	SRR3591706	second leaf	2.685
	SRR3591707	mature leaf	1.438
	SRR3591708	Shoot apex	12.980
	SRR3591709	Stem	3.401
	SRR3591710	White floral bud	4.358
	SRR3591711	White flower	3.882
	SRR3591712	Green floral bud	6.601
	SRR3591713	Yellow flower	2.420
SRP173429	SRR8316895	Juvenile bud stage	5.300
	SRR8316896	Juvenile bud stage	8.191
	SRR8316897	Juvenile bud stage	4.096
	SRR8316894	Third green stage	2.774
	SRR8316900	Third green stage	8.065
	SRR8316901	Third green stage	6.036
	SRR8316898	Complete white stage	2.322
	SRR8316899	Complete white stage	6.669
	SRR8316903	Complete white stage	3.236
	SRR8316902	Silver flowering stage	1.758
	SRR8316904	Silver flowering stage	2.928
	SRR8316905	Silver flowering stage	1.484
	SRR8316906	Gold flowering stage	5.306
	SRR8316907	Gold flowering stage	4.197
	SRR8316908	Gold flowering stage	3.827
SRP132670	SRR6706286	Control	5.723
	SRR6706287	Light intensity 50%	5.848
	SRR6706288	Light intensity 20%	6.734
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.577
	CNS0095593	Slightly white alabastrum(diploid) 2	5.753
	CNS0095594	Slightly white alabastrum(diploid) 3	6.326
	CNS0095595	Whole white alabastrum(diploid) 2	4.735
	CNS0095596	Whole white alabastrum(diploid) 3	6.236
	CNS0095597	Whole white alabastrum(diploid) 4	5.036
	CNS0095598	Silvery flower (diploied) 1	3.515
	CNS0095599	Silvery flower (diploied) 2	2.733
	CNS0095600	Silvery flower (diploied) 3	5.691
	CNS0095601	Golden flower (diploid) 1	3.239
	CNS0095602	Golden flower (diploid) 2	3.694
	CNS0095603	Golden flower (diploid) 3	4.112
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.717
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.317
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.871
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.638
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.150
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.579
	CNS0095610	Silvery flower (tetraploid) 1	3.262
	CNS0095611	Silvery flower (tetraploid) 2	3.674
	CNS0095612	Silvery flower (tetraploid) 3	4.141
	CNS0095613	Golden flower (tetraploid) 1	1.504
	CNS0095614	Golden flower (tetraploid) 2	2.773
	CNS0095615	Golden flower (tetraploid) 3	1.836
CRA001975	CRR073297	Stem 1	9.578
	CRR073298	Stem 2	7.898
	CRR073299	Stem 3	8.107
	CRR073300	Leaf 1	8.209
	CRR073301	Leaf 2	6.276
	CRR073302	Leaf 3	7.982
	CRR073303	Juvenile bud 1	7.344
	CRR073304	Juvenile bud 2	5.798
	CRR073305	Juvenile bud 3	9.198
	CRR073306	Third green 1	1.614
	CRR073307	Third green 2	1.662
	CRR073308	Third green 3	1.650
	CRR073309	Second white 1	1.357
	CRR073310	Second white 2	2.012
	CRR073311	Second white 3	1.521
	CRR073312	Silver flowering 1	1.795
	CRR073313	Silver flowering 2	1.058
	CRR073314	Silver flowering 3	1.425
	CRR073315	Gold flowering 1	2.860
	CRR073316	Gold flowering 2	5.129
	CRR073317	Gold flowering 3	4.061
	CRR073318	Tawny withering 1	5.695
	CRR073319	Tawny withering 2	4.072
	CRR073320	Tawny withering 3	8.704