Gene detail

Detail information of GWHGAAZE027102

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009769708.1	1.6646E-134	PREDICTED: protein transport protein Sec61 subunit alpha-like [Nicotiana sylvestris]
COG	YP_008431815.1	1E-25	hypothetical protein N186_02080
Swissprot	tr\|P38379\|SC61A_PYRSA	3E-96	Protein transport protein Sec61 subunit alpha
trEMBL	tr\|A0A096T586\|A0A096T586_MAIZE	2E-134	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GRMZM2G307252_P01}
TAIR10	AT1G78720.1	1E-110	SecY protein transport family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14731175	14734347	+
GWHAAZE00000008	mRNA	14731175	14734347	+
GWHAAZE00000008	exon	14731175	14731499	+
GWHAAZE00000008	exon	14731649	14731760	+
GWHAAZE00000008	exon	14732190	14732417	+
GWHAAZE00000008	exon	14732813	14732895	+
GWHAAZE00000008	exon	14733008	14733120	+
GWHAAZE00000008	exon	14733199	14733292	+
GWHAAZE00000008	exon	14734259	14734347	+
GWHAAZE00000008	CDS	14731175	14731499	+
GWHAAZE00000008	CDS	14731649	14731760	+
GWHAAZE00000008	CDS	14732190	14732417	+
GWHAAZE00000008	CDS	14732813	14732895	+
GWHAAZE00000008	CDS	14733008	14733120	+
GWHAAZE00000008	CDS	14733199	14733292	+
GWHAAZE00000008	CDS	14734259	14734347	+

Transcript Sequence
>GWHTAAZE027136 ATGGCTGGTGGATTTAAAGTGCTCCATCTTGTTCGACCATTTGTGCCATTTCTACCAGAAGTTCAGAATGCGAACAGGAAAGTTCAACTTAGAGAGAAGGTTATATACACTGTGATTTCCCTTCTCATTTTCCAGGTATGCAGTCAGCTCCCTTTGTATGGCATTCACTCCAGCACAGGTGGGGATCCTTTCTATTGGATGCATGCCATTCTCGCCTCAAGTCGTGGAACTGTGATGGAGCTTGGAATCATTCCTATTGTAACATCTGGATTGGTGATGCAACTCTTAGTGGGGACGAAGATCATTCAAGTGGATAACAACTTACGGACTGGGTATCTGTTTCTGAAGTCTTCTGATAATGTAGTTAATCAAAATGGAAATGTTGATAAAACTGTAAGAGCGCATAAGATTCAACTCGTTCTAAGCACTCTTGTTGAAAATGGTGCCCAGAAGTTGTTGGGGATCTTCATAGCTATTGGTGAGGTGGTTGCATATGTTCTCTTGGGGATGTATGGTAGTATTGGGCAACTCAGAGTTGGAAATGCAATTCTTATTATCAGTCAATTGTGGTTTGCTGTTAACATTGTTCTATGCTTGGACGAACTTCTCCAGAAAGGATATGGCCTAGGTTCTGGAATTTCTCTTTTCATAGCAACAAACATCTGCGGGCGCGGACCTGAATTTGAAGGTGCCATTATTGCTCTATTCCATCTGCTGGTAACTCGAACAGACAAGGTTCGTGCACTCTATCAAAGGCTGCCCATGGACAACAGGGTTCATATCCAATCAAACTTTTCTACACCTAACATGCCCATTATTCTACGGTCTGCATTTGTGTCCAGCATGTACTTCATTTCACAGTTGCTGTACAGGAAATTTAGTGATAGTTTCATTGTGGGTCTCATAGGAAAGTGGAGAGAATCTGAATATTCTGGTCACTCTGTCCCTATTGGCGGTATTCTACTGGCCGTAAGCATCATCTATCAGTACGTCGAGACATTTGAGAAGGAAAGAGTCAGCGAGCTTGGCTTTTTTGGTTACTAG

Network for GWHGAAZE027102

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10559.10	Plug_translocon	42	76	8.80E-15
PF00344.21	SecY	147	241	3.40E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10956	SEC61A	Protein export	map03060
		Protein processing in endoplasmic reticulum	map04141
		Phagosome	map04145

Gene Ontology

GO term	Ontology	Name
GO:0015031	biological_process	protein transport
GO:0016020	cellular_component	membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.070
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.064
SRP173429	SRR8316895	Juvenile bud stage	0.171
	SRR8316896	Juvenile bud stage	0.725
	SRR8316897	Juvenile bud stage	0.114
	SRR8316894	Third green stage	0.168
	SRR8316900	Third green stage	0.085
	SRR8316901	Third green stage	0.284
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.035
	SRR8316904	Silver flowering stage	0.025
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.044
	SRR8316907	Gold flowering stage	0.062
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.028
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.779
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.929
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.076
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.002
	CNS0095601	Golden flower (diploid) 1	0.342
	CNS0095602	Golden flower (diploid) 2	0.260
	CNS0095603	Golden flower (diploid) 3	0.097
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.081
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.259
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.029
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.045
	CNS0095610	Silvery flower (tetraploid) 1	0.064
	CNS0095611	Silvery flower (tetraploid) 2	0.033
	CNS0095612	Silvery flower (tetraploid) 3	0.062
	CNS0095613	Golden flower (tetraploid) 1	0.202
	CNS0095614	Golden flower (tetraploid) 2	0.270
	CNS0095615	Golden flower (tetraploid) 3	0.161
CRA001975	CRR073297	Stem 1	0.083
	CRR073298	Stem 2	0.089
	CRR073299	Stem 3	0.129
	CRR073300	Leaf 1	0.077
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.034
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.026
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.053
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.010