Gene detail

Detail information of GWHGAAZE027100

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007021915.1	0	DNA-directed DNA polymerases, putative [Theobroma cacao]
trEMBL	tr\|A0A061F7V3\|A0A061F7V3_THECC	0	DNA-directed DNA polymerases, putative {ECO:0000313\|EMBL:EOY13440.1}
TAIR10	AT1G78650.1	2E-91	DNA-directed DNA polymerases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14705984	14711570	+
GWHAAZE00000008	mRNA	14705984	14711570	+
GWHAAZE00000008	exon	14705984	14706190	+
GWHAAZE00000008	exon	14706831	14706886	+
GWHAAZE00000008	exon	14706979	14707103	+
GWHAAZE00000008	exon	14707883	14708042	+
GWHAAZE00000008	exon	14708643	14708735	+
GWHAAZE00000008	exon	14708821	14709242	+
GWHAAZE00000008	exon	14709680	14710207	+
GWHAAZE00000008	exon	14710741	14710840	+
GWHAAZE00000008	exon	14711435	14711570	+
GWHAAZE00000008	five_prime_UTR	14705984	14706121	+
GWHAAZE00000008	CDS	14706122	14706190	+
GWHAAZE00000008	CDS	14706831	14706886	+
GWHAAZE00000008	CDS	14706979	14707103	+
GWHAAZE00000008	CDS	14707883	14708042	+
GWHAAZE00000008	CDS	14708643	14708735	+
GWHAAZE00000008	CDS	14708821	14709242	+
GWHAAZE00000008	CDS	14709680	14710207	+
GWHAAZE00000008	CDS	14710741	14710840	+
GWHAAZE00000008	CDS	14711435	14711570	+

Transcript Sequence
>GWHTAAZE027134 TTGTTGTTTATCTTCGTCCCGTCAATGCCTATAAAAGCGCAGAAGGCACAAAGAGCGGGAAATTTTGACACACTGATTGCCGGAAGAGGAAAATTCTAGAGAATTGGTACCGATCGCGCCAACCCTAAAACCCCAAAGATGGACGAGATCGAAACCCTAGGTTTCATTAACGAGATTCAAGCCCTCGTTTCCGATAAACTTCAAGTGGTTTCTTACAAGTGGCTGAGTCGTAACTTTTTGTTGCCATCAAATGCCACAAAGAGGTTGCTTCAAGAATTTGTTGAAAAACATGGAAATGGGTTGGAAGTGGTATATACTTTGTCTGGCTGGTTGAAGAATAATCCTTCTGTTTACCATGTAAGGCTTGTTTCGAGGCCCAACCTTCAAGATGCCAAAGGAGACTTCAATGAAAATTGCTCAGTTCAGGTCTACAGCGTGCAAGCTTGCATCCCAAAGGATCCAGCAGCACTTTGGAATGCTGAGTTTATACAAGCAGAAGAGCTCTTTAAGCAACCCCCCACAGTAGATAATTGCTTGCGAGATAACAGCCCGCCGGAGTTAAGTTTATCTTATGAACAAGGACGGCTAAATGAGGTGATACACTTCCGTAAACTGGATATACTTTTAAGCGCAAGGCTTTCGTTCTGTGGAGTTTCAAGTTCCTTTGTGAAGCGCAATACCGATGGAACACCAGTAAGCACTTCAACTCCACAGGCTAAAACTGAAGGAGTCCCTGGGCCATCCTCGAGGAATTCTGCACAAGAAACTGCAACTATTCCAAAGCCTCAACAGAGAAAAATTCAACAATCGAGCCCTAATGTTGGTGGGCAGTCCTCCAGTGTGGCAAAAGATGTCAAAAGTGGAGCTCAAGAGCAGGATGGCAAGCCTACTGCAGATAAAGAAAACGTTCCTCAATTACCTGCTAATAAAAAGAAGGGGCAGGACGATAAAAGCTCTACCAGGAGTGGAAGCTCATTAGCTAGTATGTGGGGTCGCGCATCTGCAAAGCCAAAGCCCAGTTTTGTGCCAGCAGAGACTAAAAGTTCTGTTCCAAATTCTGCTGTTAGTGCAGAAGCTCAAATATGTGCACGTGAAGCAGTAGAAGATGGGAGCAGTGATGATGATGATTGTCGAGATGTCAACTTCAAGAGATCATCCAACTGTGAAGGCAGTAGAAAGAGGAGGGTTGTTTTTGATTACTCAGATGAAGAAGAAGATGAGTACAAAGATGCAGTCAGTCTGTCATCCCCGGATCCTCCAAAACTGCAATCTTCTCTAGATTCAAAACAATTTTCTAAATCTTTTCTAGATTCAAAAAAGGCTTCTGAAACTCCTGTTTTGGAGAAAAATAAGCTGGATTTCAATGAAGAAAAAGAGGTCAAGACAGAGAAAGCAACAAACAGTGAATCTAATCAATTGTCTTTGGTTTCGAGCAATGGAAAGAATGCTGGGGTTTCTTCTTCAGACAAAATTCATTGCCGTATTCCCGAGAATAATGCAAGTATGAAGGATAAAGTGGCTAATGCTGCTCCAAATTCACCTAAAAGGAGGAAAGTGTTGAAGACGAGGATTGATGAGCGTGGACGAGAAGTAACCGAGGTTGTTTGGGAGGGTGAAGAGGCGGAGACAAAAGCTACTGGTAATGCAACAAAGAAAGCTGACAGTAACCCAGTGAAGAGCACTGACAACAGGCCTCCTGTAGTTCAGAAGTCACCCACAGTAGGAGGCACTGCTGTACCAAACCCTTCGGGCAAAGGCGGGAACAAGAAAGCAGGAAACAAGGACCCTAAACAAGGGAATATTCTGTCATTTTTCAAAAAAGTTTAA

Network for GWHGAAZE027100

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09507.11	CDC27	23	114	1.80E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03504	POLD3	DNA replication	map03030
		Base excision repair	map03410
		Nucleotide excision repair	map03420
		Mismatch repair	map03430
		Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0005634	cellular_component	nucleus
GO:0043625	cellular_component	delta DNA polymerase complex
GO:0003887	molecular_function	DNA-directed DNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.569
	SRR3591706	second leaf	8.974
	SRR3591707	mature leaf	8.759
	SRR3591708	Shoot apex	20.784
	SRR3591709	Stem	10.843
	SRR3591710	White floral bud	11.433
	SRR3591711	White flower	15.209
	SRR3591712	Green floral bud	9.472
	SRR3591713	Yellow flower	14.948
SRP173429	SRR8316895	Juvenile bud stage	10.196
	SRR8316896	Juvenile bud stage	11.970
	SRR8316897	Juvenile bud stage	4.753
	SRR8316894	Third green stage	5.341
	SRR8316900	Third green stage	13.170
	SRR8316901	Third green stage	9.119
	SRR8316898	Complete white stage	8.218
	SRR8316899	Complete white stage	18.475
	SRR8316903	Complete white stage	13.561
	SRR8316902	Silver flowering stage	7.879
	SRR8316904	Silver flowering stage	13.499
	SRR8316905	Silver flowering stage	6.169
	SRR8316906	Gold flowering stage	19.293
	SRR8316907	Gold flowering stage	15.519
	SRR8316908	Gold flowering stage	14.805
SRP132670	SRR6706286	Control	13.377
	SRR6706287	Light intensity 50%	12.428
	SRR6706288	Light intensity 20%	13.234
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.607
	CNS0095593	Slightly white alabastrum(diploid) 2	9.325
	CNS0095594	Slightly white alabastrum(diploid) 3	8.660
	CNS0095595	Whole white alabastrum(diploid) 2	8.669
	CNS0095596	Whole white alabastrum(diploid) 3	5.219
	CNS0095597	Whole white alabastrum(diploid) 4	7.357
	CNS0095598	Silvery flower (diploied) 1	18.256
	CNS0095599	Silvery flower (diploied) 2	13.772
	CNS0095600	Silvery flower (diploied) 3	22.481
	CNS0095601	Golden flower (diploid) 1	18.019
	CNS0095602	Golden flower (diploid) 2	21.550
	CNS0095603	Golden flower (diploid) 3	21.797
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.891
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.403
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.102
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.338
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.860
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.269
	CNS0095610	Silvery flower (tetraploid) 1	18.970
	CNS0095611	Silvery flower (tetraploid) 2	18.735
	CNS0095612	Silvery flower (tetraploid) 3	20.616
	CNS0095613	Golden flower (tetraploid) 1	12.997
	CNS0095614	Golden flower (tetraploid) 2	16.628
	CNS0095615	Golden flower (tetraploid) 3	16.550
CRA001975	CRR073297	Stem 1	12.995
	CRR073298	Stem 2	12.800
	CRR073299	Stem 3	14.685
	CRR073300	Leaf 1	12.543
	CRR073301	Leaf 2	12.842
	CRR073302	Leaf 3	7.590
	CRR073303	Juvenile bud 1	9.041
	CRR073304	Juvenile bud 2	8.108
	CRR073305	Juvenile bud 3	9.424
	CRR073306	Third green 1	5.008
	CRR073307	Third green 2	3.789
	CRR073308	Third green 3	5.659
	CRR073309	Second white 1	4.894
	CRR073310	Second white 2	8.571
	CRR073311	Second white 3	5.169
	CRR073312	Silver flowering 1	5.062
	CRR073313	Silver flowering 2	5.448
	CRR073314	Silver flowering 3	4.507
	CRR073315	Gold flowering 1	9.933
	CRR073316	Gold flowering 2	12.976
	CRR073317	Gold flowering 3	6.427
	CRR073318	Tawny withering 1	12.254
	CRR073319	Tawny withering 2	15.061
	CRR073320	Tawny withering 3	12.865