Detail information of GWHGAAZE027096


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI20124.30unnamed protein product [Vitis vinifera]
COGYP_001958461.18E-26hypothetical protein Aasi_1443
Swissprottr|C0LGN2|Y3148_ARATH0Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 (Precursor)
trEMBLtr|F6H2L4|F6H2L4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB46201.1}
TAIR10AT1G53420.10Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1466151714667974-
GWHAAZE00000008mRNA1466151714667974-
GWHAAZE00000008exon1466794614667974-
GWHAAZE00000008exon1466770114667772-
GWHAAZE00000008exon1466736814667436-
GWHAAZE00000008exon1466718414667255-
GWHAAZE00000008exon1466701314667084-
GWHAAZE00000008exon1466637414666445-
GWHAAZE00000008exon1466621214666283-
GWHAAZE00000008exon1466605814666129-
GWHAAZE00000008exon1466583114665902-
GWHAAZE00000008exon1466558114665643-
GWHAAZE00000008exon1466532514665390-
GWHAAZE00000008exon1466519114665226-
GWHAAZE00000008exon1466500514665045-
GWHAAZE00000008exon1466454614664925-
GWHAAZE00000008exon1466433914664393-
GWHAAZE00000008exon1466378114663927-
GWHAAZE00000008exon1466315414663284-
GWHAAZE00000008exon1466283914663049-
GWHAAZE00000008exon1466250314662740-
GWHAAZE00000008exon1466204814662198-
GWHAAZE00000008exon1466151714661903-
GWHAAZE00000008CDS1466794614667974-
GWHAAZE00000008CDS1466770114667772-
GWHAAZE00000008CDS1466736814667436-
GWHAAZE00000008CDS1466718414667255-
GWHAAZE00000008CDS1466701314667084-
GWHAAZE00000008CDS1466637414666445-
GWHAAZE00000008CDS1466621214666283-
GWHAAZE00000008CDS1466605814666129-
GWHAAZE00000008CDS1466583114665902-
GWHAAZE00000008CDS1466558114665643-
GWHAAZE00000008CDS1466532514665390-
GWHAAZE00000008CDS1466519114665226-
GWHAAZE00000008CDS1466500514665045-
GWHAAZE00000008CDS1466454614664925-
GWHAAZE00000008CDS1466433914664393-
GWHAAZE00000008CDS1466378114663927-
GWHAAZE00000008CDS1466315414663284-
GWHAAZE00000008CDS1466283914663049-
GWHAAZE00000008CDS1466250314662740-
GWHAAZE00000008CDS1466204814662198-
GWHAAZE00000008CDS1466151714661903-
Transcript Sequence

Network for GWHGAAZE027096

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13855.7LRR_81492084.80E-07
PF11721.9Malectin2733966.90E-24
PF07714.18PK_Tyr_Ser-Thr4957613.50E-47
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_DLSV

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.483
SRR3591706second leaf4.748
SRR3591707mature leaf3.428
SRR3591708Shoot apex8.273
SRR3591709Stem7.177
SRR3591710White floral bud3.912
SRR3591711White flower4.429
SRR3591712Green floral bud5.215
SRR3591713Yellow flower5.273
SRP173429 SRR8316895Juvenile bud stage 8.102
SRR8316896Juvenile bud stage 11.523
SRR8316897Juvenile bud stage 6.164
SRR8316894Third green stage 4.289
SRR8316900Third green stage 8.951
SRR8316901Third green stage 8.163
SRR8316898Complete white stage 2.232
SRR8316899Complete white stage 9.279
SRR8316903Complete white stage 4.397
SRR8316902Silver flowering stage2.018
SRR8316904Silver flowering stage4.092
SRR8316905Silver flowering stage1.577
SRR8316906Gold flowering stage 5.755
SRR8316907Gold flowering stage 5.189
SRR8316908Gold flowering stage 4.582
SRP132670SRR6706286Control4.285
SRR6706287Light intensity 50%4.876
SRR6706288Light intensity 20%5.465
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.554
CNS0095593Slightly white alabastrum(diploid) 29.624
CNS0095594Slightly white alabastrum(diploid) 39.211
CNS0095595Whole white alabastrum(diploid) 25.649
CNS0095596Whole white alabastrum(diploid) 34.804
CNS0095597Whole white alabastrum(diploid) 44.597
CNS0095598Silvery flower (diploied) 17.082
CNS0095599Silvery flower (diploied) 25.841
CNS0095600Silvery flower (diploied) 34.662
CNS0095601Golden flower (diploid) 14.755
CNS0095602Golden flower (diploid) 23.852
CNS0095603Golden flower (diploid) 34.613
CNS0095604Slightly white alabastrum(tetraploid) 110.049
CNS0095605Slightly white alabastrum(tetraploid) 28.181
CNS0095606Slightly white alabastrum(tetraploid) 310.533
CNS0095607Whole white alabastrum(tetraploid) 13.218
CNS0095608Whole white alabastrum(tetraploid) 23.372
CNS0095609Whole white alabastrum(tetraploid) 36.877
CNS0095610Silvery flower (tetraploid) 14.378
CNS0095611Silvery flower (tetraploid) 23.123
CNS0095612Silvery flower (tetraploid) 33.848
CNS0095613Golden flower (tetraploid) 12.380
CNS0095614Golden flower (tetraploid) 23.399
CNS0095615Golden flower (tetraploid) 31.562
CRA001975CRR073297Stem 16.393
CRR073298Stem 25.606
CRR073299Stem 32.578
CRR073300Leaf 15.441
CRR073301Leaf 26.682
CRR073302Leaf 33.237
CRR073303Juvenile bud 13.165
CRR073304Juvenile bud 21.712
CRR073305Juvenile bud 32.891
CRR073306Third green 10.712
CRR073307Third green 20.645
CRR073308Third green 31.127
CRR073309Second white 11.212
CRR073310Second white 21.175
CRR073311Second white 31.718
CRR073312Silver flowering 10.834
CRR073313Silver flowering 20.730
CRR073314Silver flowering 30.417
CRR073315Gold flowering 10.739
CRR073316Gold flowering 21.351
CRR073317Gold flowering 31.185
CRR073318Tawny withering 12.943
CRR073319Tawny withering 21.863
CRR073320Tawny withering 32.776