Gene detail

Detail information of GWHGAAZE027083

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004294176.1	0	PREDICTED: mitogen-activated protein kinase 19-like [Fragaria vesca subsp. vesca]
COG	YP_002560205.1	1E-26	hypothetical protein MCCL_0802
Swissprot	tr\|Q9LUC3\|MPK19_ARATH	0	Mitogen-activated protein kinase 19
trEMBL	tr\|U5G206\|U5G206_POPTR	0	Mitogen-activated protein kinase homologue {ECO:0000313\|EMBL:ERP55502.1}
TAIR10	AT3G14720.1	0	MAP kinase 19

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14495822	14501980	+
GWHAAZE00000008	mRNA	14495822	14501980	+
GWHAAZE00000008	exon	14495822	14495983	+
GWHAAZE00000008	exon	14497347	14497755	+
GWHAAZE00000008	exon	14497947	14498074	+
GWHAAZE00000008	exon	14498178	14498237	+
GWHAAZE00000008	exon	14500221	14500370	+
GWHAAZE00000008	exon	14500486	14500641	+
GWHAAZE00000008	exon	14500739	14500950	+
GWHAAZE00000008	exon	14501081	14501182	+
GWHAAZE00000008	exon	14501270	14501433	+
GWHAAZE00000008	exon	14501529	14501980	+
GWHAAZE00000008	five_prime_UTR	14495822	14495959	+
GWHAAZE00000008	CDS	14495960	14495983	+
GWHAAZE00000008	CDS	14497347	14497755	+
GWHAAZE00000008	CDS	14497947	14498074	+
GWHAAZE00000008	CDS	14498178	14498237	+
GWHAAZE00000008	CDS	14500221	14500370	+
GWHAAZE00000008	CDS	14500486	14500641	+
GWHAAZE00000008	CDS	14500739	14500950	+
GWHAAZE00000008	CDS	14501081	14501182	+
GWHAAZE00000008	CDS	14501270	14501433	+
GWHAAZE00000008	CDS	14501529	14501980	+

Transcript Sequence
>GWHTAAZE027117 TTTTTGTTCTGATCTGAGAGGAGGAGAGAGAGAGAGGTGGAAGAAGACAATCACACAGGCGTAGGTTTTCGTGTTTTTGATCTGATCGGGAGGAGAATCAGAGCAGTTCTTTGTGGTTGTTCCATATTAAATTTAACGATGCAGCAAGATCAGCGAAAGAAGAACCCAAAAGAGATGGAGTTCTTCACTGAGTATGGGGATGCCAATCGATACAAAATTCTGGAGGTTATAGGGAAGGGAAGCTATGGAGTCGTTTGTGCAGCCATTGACACACATACCGGGGAGAAAGTTGCTATAAAGAAAATAAACGACATCTTTGAGCATTTATCCGATGCTATTCGAATTTTGCGTGAGATAAAGTTGCTTAGGCTTTTGCGTCATCCTGATATTGTTGAAATTAAGCGCATCATGTTGCCACCTTCAAGGCGGGACTTCAAAGATGTTTATGTTGTGTTTGAGCTTATGGAGTCGGACCTTCACCAAGTCATCAAAGCCAATGATGATTTGACGCTTGAGCACCATCGGTTTTTTCTCTATCAAATGCTACGTGCCTTAAAGTATATGCACACAGCAAATGTATACCATCGGGATCTTAAACCAAAGAATATATTGGCAAATGCAAATTGCAAACTCAAAATATGTGATTTTGGACTTGCGAGAGTTGCCTTTAGTGATACCCCAACGACAATATTTTGGACGGATTATGTTGCTACAAGATGGTATAGGGCTCCAGAGCTATGCGGATCATTCTTCTCTAAGTATACGCCCGCTATTGATATTTGGAGTATTGGCTGCATTTTTGCTGAAGTATTGACCGGAAGGCCATTGTTCCCTGGTAAAAGTGTTGTTCATCAGTTAGATCTCATAACTGATCTTCTTGGGACACCATCAGCAGATACTATTTCTGGAGTTCGAAATGAGAAAGCAAGAAAGTATTTAGTAGATATGCATAAAAAGCATTCTGTGCCATTTGTTGAGAAATTTCCAAACGCTGATCCTCTAGCACTACGAATGTTGCAAAGATTGTTAGCATTTGATCCAAAGGATAGACCAACTGCTGAACAGGCGTTGGCTGATCCATACTTTAAGGGTTTGTCCAAGGTTGAGAGAGAACCTTCTTGTCAGCCAATTTCCAAGTTGGAATTCGAGTTTGAGAGGCGCAGGGTAACAAAGGAGGACATTAGAGAACTAATATTCCGGGAGATTTTAGAATACCATCCACAATTACTCAAAGAATACATGACTGGTAGTGAAGGCACCAATTTTCTCTACCCAAGTGCTATTGGTCAGTTTCGAAGGCAGTTTGCATATCTAGAGGAACATGGTGCTAAAAGTGGGCCTGTTATTCCTCCAGAGAGGAAACATGTCTCGCTCCCCAGGTCTACAGTTAATTCGAGTATAATTCATGCCAAAACGCAGCAAAATTTGGCTGCATTTGACAACCGTCGAATTCCAGAAGAAGTGTGTAGTGGTGGTAGAGTTACAGATGGAACTTCGGGAAATTTGTTGAAGCCTTCACGGCCACCACCGGGTATGCCCACAGCCAAACCGGGAAGAGTTGTCGGACCTGTAATACCATACGATGGGAACAGGGGTGTGAAAGATGTCTATGATACAAGAGGGGTATGTCTCAGAAACGCTGTTCTCCCTCCACAGATTATATCTCCTCATTATTTCTTCAGGACCAATAATTCTGGGAATAAAGAGAAGTCGAGGACGCAGGCCGAGACTGATTGTTTGTTAGCCAAACAACAGCATTGTCAGGCCCAATGCATACCAGCCAAACTACCTCCGGGACATGGCAGCATGGCGATTGACATGAATACAAATCCATATTATCAGCAGCCACAAGCCAATTCTAAAAATGAACATCCTATGACAATAGATGCAAAATTGAGGCAAGCACAATCTCAGTTTGGAGCAGTAGGAGCAGCAGCAGTTGCTGTGGCGGCTCATAGAGAGGTTGGTTCTGTACATTTAGGACTACTGTCGTAG

Network for GWHGAAZE027083

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	25	316	6.20E-66

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_MAPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004707	molecular_function	MAP kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.522
	SRR3591706	second leaf	18.722
	SRR3591707	mature leaf	21.621
	SRR3591708	Shoot apex	33.215
	SRR3591709	Stem	46.577
	SRR3591710	White floral bud	45.644
	SRR3591711	White flower	48.221
	SRR3591712	Green floral bud	28.843
	SRR3591713	Yellow flower	42.920
SRP173429	SRR8316895	Juvenile bud stage	16.834
	SRR8316896	Juvenile bud stage	25.917
	SRR8316897	Juvenile bud stage	10.394
	SRR8316894	Third green stage	11.413
	SRR8316900	Third green stage	31.669
	SRR8316901	Third green stage	32.302
	SRR8316898	Complete white stage	27.764
	SRR8316899	Complete white stage	55.554
	SRR8316903	Complete white stage	37.372
	SRR8316902	Silver flowering stage	22.156
	SRR8316904	Silver flowering stage	30.562
	SRR8316905	Silver flowering stage	14.051
	SRR8316906	Gold flowering stage	43.026
	SRR8316907	Gold flowering stage	44.203
	SRR8316908	Gold flowering stage	44.733
SRP132670	SRR6706286	Control	22.275
	SRR6706287	Light intensity 50%	23.909
	SRR6706288	Light intensity 20%	23.106
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.864
	CNS0095593	Slightly white alabastrum(diploid) 2	18.600
	CNS0095594	Slightly white alabastrum(diploid) 3	17.430
	CNS0095595	Whole white alabastrum(diploid) 2	17.082
	CNS0095596	Whole white alabastrum(diploid) 3	17.609
	CNS0095597	Whole white alabastrum(diploid) 4	19.991
	CNS0095598	Silvery flower (diploied) 1	37.419
	CNS0095599	Silvery flower (diploied) 2	23.982
	CNS0095600	Silvery flower (diploied) 3	47.191
	CNS0095601	Golden flower (diploid) 1	28.436
	CNS0095602	Golden flower (diploid) 2	39.328
	CNS0095603	Golden flower (diploid) 3	36.721
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.801
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.132
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.872
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.433
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.489
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.959
	CNS0095610	Silvery flower (tetraploid) 1	44.216
	CNS0095611	Silvery flower (tetraploid) 2	39.838
	CNS0095612	Silvery flower (tetraploid) 3	50.147
	CNS0095613	Golden flower (tetraploid) 1	24.209
	CNS0095614	Golden flower (tetraploid) 2	35.222
	CNS0095615	Golden flower (tetraploid) 3	38.874
CRA001975	CRR073297	Stem 1	29.605
	CRR073298	Stem 2	26.788
	CRR073299	Stem 3	18.405
	CRR073300	Leaf 1	29.340
	CRR073301	Leaf 2	26.640
	CRR073302	Leaf 3	20.497
	CRR073303	Juvenile bud 1	21.013
	CRR073304	Juvenile bud 2	16.478
	CRR073305	Juvenile bud 3	27.613
	CRR073306	Third green 1	24.601
	CRR073307	Third green 2	22.171
	CRR073308	Third green 3	24.598
	CRR073309	Second white 1	22.321
	CRR073310	Second white 2	24.465
	CRR073311	Second white 3	25.366
	CRR073312	Silver flowering 1	21.453
	CRR073313	Silver flowering 2	25.025
	CRR073314	Silver flowering 3	22.457
	CRR073315	Gold flowering 1	12.066
	CRR073316	Gold flowering 2	15.997
	CRR073317	Gold flowering 3	10.245
	CRR073318	Tawny withering 1	19.240
	CRR073319	Tawny withering 2	19.174
	CRR073320	Tawny withering 3	22.049