Detail information of GWHGAAZE027080


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002300442.20solanesyl diphosphate synthase family protein [Populus trichocarpa]
COGNP_682547.15E-127solanesyl diphosphate synthase
Swissprottr|Q76FS5|SPS2_ARATH0Solanesyl diphosphate synthase 2, chloroplastic (Precursor)
trEMBLtr|B9GGY7|B9GGY7_POPTR0Solanesyl diphosphate synthase family protein {ECO:0000313|EMBL:EEE85247.2}
TAIR10AT1G17050.12E-168solanesyl diphosphate synthase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1445362814456475-
GWHAAZE00000008mRNA1445362814456475-
GWHAAZE00000008exon1445618814456475-
GWHAAZE00000008exon1445594314456067-
GWHAAZE00000008exon1445508214455209-
GWHAAZE00000008exon1445488314454986-
GWHAAZE00000008exon1445435314454480-
GWHAAZE00000008exon1445362814454250-
GWHAAZE00000008five_prime_UTR1445642614456475-
GWHAAZE00000008CDS1445618814456425-
GWHAAZE00000008CDS1445594314456067-
GWHAAZE00000008CDS1445508214455209-
GWHAAZE00000008CDS1445488314454986-
GWHAAZE00000008CDS1445435314454480-
GWHAAZE00000008CDS1445370214454250-
GWHAAZE00000008three_prime_UTR1445362814453701-
Transcript Sequence

Network for GWHGAAZE027080

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00348.18polyprenyl_synt1293745.30E-73
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05356SPS, sds Biosynthesis of secondary metabolites map01110
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0008299biological_processisoprenoid biosynthetic process

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.423
SRR3591706second leaf57.155
SRR3591707mature leaf128.055
SRR3591708Shoot apex15.948
SRR3591709Stem16.635
SRR3591710White floral bud21.067
SRR3591711White flower26.378
SRR3591712Green floral bud13.933
SRR3591713Yellow flower9.519
SRP173429 SRR8316895Juvenile bud stage 9.990
SRR8316896Juvenile bud stage 10.740
SRR8316897Juvenile bud stage 4.207
SRR8316894Third green stage 6.346
SRR8316900Third green stage 21.194
SRR8316901Third green stage 21.248
SRR8316898Complete white stage 15.946
SRR8316899Complete white stage 25.196
SRR8316903Complete white stage 18.659
SRR8316902Silver flowering stage17.210
SRR8316904Silver flowering stage21.858
SRR8316905Silver flowering stage11.406
SRR8316906Gold flowering stage 18.764
SRR8316907Gold flowering stage 9.029
SRR8316908Gold flowering stage 18.145
SRP132670SRR6706286Control30.840
SRR6706287Light intensity 50%25.587
SRR6706288Light intensity 20%27.537
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.875
CNS0095593Slightly white alabastrum(diploid) 25.626
CNS0095594Slightly white alabastrum(diploid) 38.281
CNS0095595Whole white alabastrum(diploid) 27.532
CNS0095596Whole white alabastrum(diploid) 36.719
CNS0095597Whole white alabastrum(diploid) 47.201
CNS0095598Silvery flower (diploied) 117.504
CNS0095599Silvery flower (diploied) 215.375
CNS0095600Silvery flower (diploied) 346.806
CNS0095601Golden flower (diploid) 114.977
CNS0095602Golden flower (diploid) 223.449
CNS0095603Golden flower (diploid) 322.800
CNS0095604Slightly white alabastrum(tetraploid) 17.991
CNS0095605Slightly white alabastrum(tetraploid) 27.231
CNS0095606Slightly white alabastrum(tetraploid) 316.157
CNS0095607Whole white alabastrum(tetraploid) 14.244
CNS0095608Whole white alabastrum(tetraploid) 26.663
CNS0095609Whole white alabastrum(tetraploid) 314.667
CNS0095610Silvery flower (tetraploid) 185.842
CNS0095611Silvery flower (tetraploid) 274.285
CNS0095612Silvery flower (tetraploid) 38.122
CNS0095613Golden flower (tetraploid) 116.583
CNS0095614Golden flower (tetraploid) 242.285
CNS0095615Golden flower (tetraploid) 34.116
CRA001975CRR073297Stem 112.290
CRR073298Stem 210.353
CRR073299Stem 313.298
CRR073300Leaf 112.215
CRR073301Leaf 215.879
CRR073302Leaf 312.222
CRR073303Juvenile bud 116.196
CRR073304Juvenile bud 219.660
CRR073305Juvenile bud 313.839
CRR073306Third green 144.691
CRR073307Third green 226.844
CRR073308Third green 333.522
CRR073309Second white 110.626
CRR073310Second white 220.560
CRR073311Second white 312.236
CRR073312Silver flowering 11.999
CRR073313Silver flowering 22.877
CRR073314Silver flowering 32.912
CRR073315Gold flowering 183.289
CRR073316Gold flowering 291.860
CRR073317Gold flowering 350.195
CRR073318Tawny withering 16.771
CRR073319Tawny withering 25.399
CRR073320Tawny withering 37.032