Gene detail

Detail information of GWHGAAZE027067

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010644793.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 15 [Vitis vinifera]
Swissprot	tr\|Q9FPS9\|UBP15_ARATH	Ubiquitin carboxyl-terminal hydrolase 15
trEMBL	tr\|F6HRG0\|F6HRG0_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57268.1}
TAIR10	AT1G17110.1	ubiquitin-specific protease 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14262677	14269163	+
GWHAAZE00000008	mRNA	14262677	14269163	+
GWHAAZE00000008	exon	14262677	14263071	+
GWHAAZE00000008	exon	14263823	14264219	+
GWHAAZE00000008	exon	14264587	14265022	+
GWHAAZE00000008	exon	14265099	14265250	+
GWHAAZE00000008	exon	14265602	14265690	+
GWHAAZE00000008	exon	14265780	14265865	+
GWHAAZE00000008	exon	14265963	14266125	+
GWHAAZE00000008	exon	14266613	14266736	+
GWHAAZE00000008	exon	14266850	14267007	+
GWHAAZE00000008	exon	14267224	14267308	+
GWHAAZE00000008	exon	14267423	14267635	+
GWHAAZE00000008	exon	14268044	14268105	+
GWHAAZE00000008	exon	14268593	14269163	+
GWHAAZE00000008	CDS	14262677	14263071	+
GWHAAZE00000008	CDS	14263823	14264219	+
GWHAAZE00000008	CDS	14264587	14265022	+
GWHAAZE00000008	CDS	14265099	14265250	+
GWHAAZE00000008	CDS	14265602	14265690	+
GWHAAZE00000008	CDS	14265780	14265865	+
GWHAAZE00000008	CDS	14265963	14266125	+
GWHAAZE00000008	CDS	14266613	14266736	+
GWHAAZE00000008	CDS	14266850	14267007	+
GWHAAZE00000008	CDS	14267224	14267308	+
GWHAAZE00000008	CDS	14267423	14267635	+
GWHAAZE00000008	CDS	14268044	14268105	+
GWHAAZE00000008	CDS	14268593	14269163	+

Transcript Sequence
>GWHTAAZE027101 ATGCTTGAGCCAAGGGAAACGGATATACCTGCCCTGTTTCTGGTCTTGGTTGTGCTTCCCCTCCTTACTTACATCTTACTAGGAAAATGGAGTGAGTCTTCAAAGAAGAAAGAGAGGATCAGTTTACTTGCTCAGTTGGCTGCCGAAGAAGCTTTTAGAGCTGAAGCCATGGCTGCGGCTATGGCTACAGCTACAACTACAACTATGGCTGAGGCTACAGTTTCAGCTGCAGCTACAGCTACGGCCACGGCTACAGCTACAGCTACGGCTACAGCTATGCCTATGGCTACTATTATCCCTCACGTATCGTTGTCAAAGAATGGAATACATGAATGTGCTAGATGCCATGGTCCAGCTACAACTCGCTGTGCCCGATGCAAGTCTGTTCGGTATTGTTCTGGGAAGTGCCAGATAATTCACTGGAGGCAAGTTCACAAGCAAGAGTGCCAACAGTTGGAGTACAACAGCTGCAGCTCTCCTAATTTTGCCTCACACGAGGATTCTATTAATGAAAGGGTATCAGTTGATGAAGAATCACGGTCCTTTGGATACAGTATCAAGCAGCCTAGGCATGAGAAAACGCCTCCCCAGGATATAATTCACCCCCCTGTTTGCAGAGTTTCCTCTGCTAGTGCTTCTTGTATGGATACTTCTGGAGTCGTCACTAAGGAGAGAAGATCTATAGACAAGCAGATTTCTCGTAAATTGAGAAAGGAAATGTTAAGAAGAGAAGATGGAGCCGTAATGGAGCCTACTACTAATTCATCGAACAATGCTTATATGAGAAATAAGCTCAAAGAAAATAACCATCTCCCTTTGGAAGAAGAAATACCTGATAAAAACAACAATATGGTTGGTGGGTTTAGCAACGGACATTTGACACCAAGAAGTTCAATGCATGATGGTCACAAGTCACAAAGCCACAACAAGAAAATACTTGATTCAAGAACTAATTTTGGCATCTCAAATGGGAGAAATACTCGTGATATTGAAATGGAGTTAGTAAATGGAGGGAGCTTACCTAGGGGGGGAATCAGTTCGAATGATGAAATGTTAGAGTTGAACTGCTCACCTGAAAGAACCTCGATGAAGAAAAGTAACAAATATAAAAGTGCATCACATTCTCCTGGAATGAAAATGTATAAATCACCAAAAACTACTGTAAAATCATCAAGAGAACAATCATGTTCGGATATGGATAAGAAGAGCCAAATTGCAGACGAGTCAAAATTTGCTAGAGCGAGAGATACCATCCCTGCTCAGGGAAGCAATGGGGTTGCAAGCATGGGATTTATGAAGATGATTGGCTTGATGAGGTCCTCAAAACCCGACAGATTGGATTATTTGGAAGTTAACAGTGACAGGCATAAGAAAATAAAGATGTTATTTCCATATGAAGAATTTGTGAAGTACTTTCAGTGTGAAGTTTTCGACTTAGCTCCTAGAGGCCTTGTAAATTGTGGGAACAGCTGTTATGCAAATGCCGTCTTGCAGTGTTTAACCTGCACAAAGCCTCTGACCATCTATTTACTCCGCAGATCACACTCTAGAGCCTGTTGTGGAAAAGATTGGTGCCTCATGTGTGAACTCGAGCAACATGTGATGATGCTTAGAGAAAGTGGAGGCCCTCTGTCTCCCGGCGGCATTCTCTTGCACATGCGCAGTATCAATTGCCAGATTGGCGATGGAAGTCAGGAAGACGCACATGAATTTTTAAGGTTTCTTGTTACATCAATGCAATCTATATGCCTGGAGGGTTTAGGTGGAGAGAACGTAGTTGATCCGCGATTGCAAGAAACAACGTTTATACAACACACTTTTGGGGGGCGCCTTAGATCAAAGGTCAAATGTTTGAGATGTCATCATGAGTCAGAACGGTATGAAAACATTATGGATCTTACATTGGAGATATTTGGCTGGGTTGAGTCTCTAGAAGATGCTCTCACTCAGTTTACAAGTGCAGAAGATTTGGATGGAGAAAACATGTATAGATGTGGAAGGTGTTCTGCATATGTTCGTGCGCGCAAGCAGCTGAGCATACAAGAGGCTCCAAATATTTTGACCATTGTGCTGAAGAGATTTCAGGAGGGCAGTTACGGCAAGATAAACAAGTGTATCACTTTTCCCGACATGCTTGATATGATCCCATTTATGACTGGGACAGATGATATCCCTCCCCTTTACATGCTTTATGCTGTTGTTGTGCATTTAGATACATTGAATGCATCTTTTTCGGGGCATTATATCTCGTACATCAAAGATCTTCGAGGCAATTGGTTCAGAATTGATGATACTGAGGTCCAGCCAGTGCCAGCAAGCCAGGTGATGTCTGAAGGAGCATATATCCTATTCTACATGAGGTCGTGCCCCCGCCCTGCACGAGCTTCCACTGGGAAACCTACACGCCACAGTTCTCCAGGCTTTGCCAAACACTGGACCTCAAAAACTCCAAAGTCATCAAGATCTGGGCAAAGTAAATCCAGTTGCCACTTTGTCAGCCCCAAGCCTTCTTCCTCAGACCATTGGAGTTTAAATAGCAAAAAACCACCAACGGTCAGCGATTCAAGAAATGTGGAATTTTCAGATGCTACATCAAGTGATCGCTCCTTTTTCACAAGCTCGGATGAGGCATCTTTTACAACAGAAAGTACTAGAGACTCTTTCAGTACCGTTGATTATGCTGATGCTGCATGTAATATTGATCCATTCTCATCAATCTTCAACACCTTGTATGCACCGGATTATTCCTCTCATAAAACCGTCTCGTATAGTAGATTCTCAAGAAGTAGGCCCCAGTCAAGATTTGTTTCTGAAGGGAAAAAATCCGTTATGGAATCAATCGAGGCTTTTCCTTCCGATAGTACATATGTTAAATATCATAGTAGTTCCAAAGATGGGACCCGTAGAACTTCAGCTCATTGTAAACTTTAG

Network for GWHGAAZE027067

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01753.19	zf-MYND	112	149	1.80E-09
PF00443.30	UCH	482	785	1.20E-42

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016579	biological_process	protein deubiquitination
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.358
	SRR3591706	second leaf	17.016
	SRR3591707	mature leaf	10.667
	SRR3591708	Shoot apex	27.183
	SRR3591709	Stem	19.551
	SRR3591710	White floral bud	10.176
	SRR3591711	White flower	10.138
	SRR3591712	Green floral bud	16.629
	SRR3591713	Yellow flower	4.766
SRP173429	SRR8316895	Juvenile bud stage	10.730
	SRR8316896	Juvenile bud stage	13.011
	SRR8316897	Juvenile bud stage	6.522
	SRR8316894	Third green stage	7.092
	SRR8316900	Third green stage	15.906
	SRR8316901	Third green stage	13.084
	SRR8316898	Complete white stage	3.479
	SRR8316899	Complete white stage	19.272
	SRR8316903	Complete white stage	6.555
	SRR8316902	Silver flowering stage	2.657
	SRR8316904	Silver flowering stage	5.442
	SRR8316905	Silver flowering stage	2.295
	SRR8316906	Gold flowering stage	5.411
	SRR8316907	Gold flowering stage	4.433
	SRR8316908	Gold flowering stage	6.033
SRP132670	SRR6706286	Control	15.216
	SRR6706287	Light intensity 50%	14.961
	SRR6706288	Light intensity 20%	15.707
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.339
	CNS0095593	Slightly white alabastrum(diploid) 2	11.853
	CNS0095594	Slightly white alabastrum(diploid) 3	8.743
	CNS0095595	Whole white alabastrum(diploid) 2	9.117
	CNS0095596	Whole white alabastrum(diploid) 3	6.897
	CNS0095597	Whole white alabastrum(diploid) 4	6.941
	CNS0095598	Silvery flower (diploied) 1	16.857
	CNS0095599	Silvery flower (diploied) 2	10.932
	CNS0095600	Silvery flower (diploied) 3	11.258
	CNS0095601	Golden flower (diploid) 1	12.499
	CNS0095602	Golden flower (diploid) 2	12.685
	CNS0095603	Golden flower (diploid) 3	13.596
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.240
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.824
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.044
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.169
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.656
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.270
	CNS0095610	Silvery flower (tetraploid) 1	11.298
	CNS0095611	Silvery flower (tetraploid) 2	13.763
	CNS0095612	Silvery flower (tetraploid) 3	6.413
	CNS0095613	Golden flower (tetraploid) 1	2.779
	CNS0095614	Golden flower (tetraploid) 2	8.712
	CNS0095615	Golden flower (tetraploid) 3	2.555
CRA001975	CRR073297	Stem 1	13.515
	CRR073298	Stem 2	13.434
	CRR073299	Stem 3	10.942
	CRR073300	Leaf 1	14.050
	CRR073301	Leaf 2	12.605
	CRR073302	Leaf 3	9.849
	CRR073303	Juvenile bud 1	9.505
	CRR073304	Juvenile bud 2	5.922
	CRR073305	Juvenile bud 3	13.062
	CRR073306	Third green 1	0.810
	CRR073307	Third green 2	1.009
	CRR073308	Third green 3	1.092
	CRR073309	Second white 1	0.426
	CRR073310	Second white 2	0.763
	CRR073311	Second white 3	0.795
	CRR073312	Silver flowering 1	0.243
	CRR073313	Silver flowering 2	0.789
	CRR073314	Silver flowering 3	0.053
	CRR073315	Gold flowering 1	3.187
	CRR073316	Gold flowering 2	5.796
	CRR073317	Gold flowering 3	2.144
	CRR073318	Tawny withering 1	8.305
	CRR073319	Tawny withering 2	9.338
	CRR073320	Tawny withering 3	10.853