Gene detail

Detail information of GWHGAAZE027066

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AID65071.1	0	gibberellin 2-oxidase 2 [Diospyros kaki]
COG	YP_007565700.1	1E-28	putative oxidoreductase
Swissprot	tr\|Q9SQ80\|G2OX1_PEA	3E-163	Gibberellin 2-beta-dioxygenase 1
trEMBL	tr\|A0A068FFG2\|A0A068FFG2_DIOKA	0	Gibberellin 2-oxidase 2 {ECO:0000313\|EMBL:AID65071.1}
TAIR10	AT1G30040.1	5E-106	gibberellin 2-oxidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14245087	14247152	-
GWHAAZE00000008	mRNA	14245087	14247152	-
GWHAAZE00000008	exon	14245087	14245371	-
GWHAAZE00000008	exon	14246190	14246538	-
GWHAAZE00000008	exon	14246743	14247152	-
GWHAAZE00000008	CDS	14246743	14247152	-
GWHAAZE00000008	CDS	14246190	14246538	-
GWHAAZE00000008	CDS	14245087	14245371	-

Transcript Sequence
>GWHTAAZE027100 ATGGTGGTCTTATCAAAACCAGCACCACTTGAACAATTGAGTATCACCAAATCCTCAAAACCCACCACATTATCAATATTCCCTACAATCCCCGTTATCGACCTCTCAAAACCTGGCTCGAAAAACCTCCTCGTTAAGGCTTGCGAAGAATTCGGATTCTTTAAGGTTATCAATCATGGGGTCCCGGTTGAATTCATCAACAAACTAGAATTAGAAGCCATTAAATTCTTCTCTTTACCCTTGTCTGAAAAAGAAAAGGCAGGGCCGCCAGACCCTTTTGGTTATGGGAATAAGAGGATTGGACCTAATGGAGATATTGGGTGGGTTGAATATCTTCTCCTCACAACCAAACAAGATTTCAATTATCAGAGACTCGTCTCAATCTTTGGTGAAAACCAAGAAAAATTATGTTGTTGTGTGAATGATTATGTATCAGCTGTGAAGAAGATGAGTTGTGAGATACTTGAAATGATGGCTGATGGATTGAAGATTGAAGAGAGGAATGCGTTTAGTAAGCTTTTGAAGGATGAACAGAGTGACTCTGTTTTTAGGCTAAATCACTACCCTCCATGCCCTGAGCTGAATGAGTTGAATAATGGGAATTTGATTGGATTTGGAGAGCACACTGACCCACAAATCATATCTGCATTGAGATCTAATAACACAAGTGGCCTTCAAATTTCATTGACAGATGGAAATTGGGTTTCAGTTCCACCTGATCACAACTCTTTCTTCATCAATGTTGGTGACTCCTTACAGGTAATGACTAATGGGAGGTTTAAGAGTGTGAGACATAGGGTAATGGCAAACAGGTACAAATCAAGGGTGTCAATGATATATTTTGGGGGGCCACCATTGAGTGAGAAGATAGCTCCATTGCCTTCACTTATGGAAGCTTGGGGAGAGCACAGTTTGTACAAGGAGTTTACTTGGTTCGACTACAAAAAATCTGCTTACAATTCAAGGCTTTCTGATAATAGGTTGGGCCTTTTTGAGAAAATCACTGCCTCCCTCCCTCATCCATTGTGTTCAATTTTAGAGTAA

Network for GWHGAAZE027066

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	30	97	1.30E-14
PF03171.21	2OG-FeII_Oxy	180	282	6.90E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04125	E1.14.11.13	Biosynthesis of secondary metabolites	map01110
K04125	E1.14.11.13	Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.875
	SRR3591706	second leaf	0.192
	SRR3591707	mature leaf	0.329
	SRR3591708	Shoot apex	5.010
	SRR3591709	Stem	22.624
	SRR3591710	White floral bud	1.008
	SRR3591711	White flower	2.389
	SRR3591712	Green floral bud	0.063
	SRR3591713	Yellow flower	0.448
SRP173429	SRR8316895	Juvenile bud stage	0.186
	SRR8316896	Juvenile bud stage	0.032
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.184
	SRR8316900	Third green stage	0.211
	SRR8316901	Third green stage	0.289
	SRR8316898	Complete white stage	0.158
	SRR8316899	Complete white stage	0.452
	SRR8316903	Complete white stage	0.447
	SRR8316902	Silver flowering stage	0.773
	SRR8316904	Silver flowering stage	5.129
	SRR8316905	Silver flowering stage	0.473
	SRR8316906	Gold flowering stage	0.489
	SRR8316907	Gold flowering stage	0.351
	SRR8316908	Gold flowering stage	0.822
SRP132670	SRR6706286	Control	0.104
	SRR6706287	Light intensity 50%	0.069
	SRR6706288	Light intensity 20%	0.021
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.276
	CNS0095593	Slightly white alabastrum(diploid) 2	0.041
	CNS0095594	Slightly white alabastrum(diploid) 3	0.098
	CNS0095595	Whole white alabastrum(diploid) 2	0.286
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	1.334
	CNS0095599	Silvery flower (diploied) 2	0.863
	CNS0095600	Silvery flower (diploied) 3	2.574
	CNS0095601	Golden flower (diploid) 1	1.966
	CNS0095602	Golden flower (diploid) 2	2.137
	CNS0095603	Golden flower (diploid) 3	2.179
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.369
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.361
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.701
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.410
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.291
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.144
	CNS0095610	Silvery flower (tetraploid) 1	10.335
	CNS0095611	Silvery flower (tetraploid) 2	7.809
	CNS0095612	Silvery flower (tetraploid) 3	0.045
	CNS0095613	Golden flower (tetraploid) 1	0.850
	CNS0095614	Golden flower (tetraploid) 2	1.679
	CNS0095615	Golden flower (tetraploid) 3	0.186
CRA001975	CRR073297	Stem 1	0.068
	CRR073298	Stem 2	0.035
	CRR073299	Stem 3	0.125
	CRR073300	Leaf 1	0.047
	CRR073301	Leaf 2	0.086
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.123
	CRR073306	Third green 1	0.068
	CRR073307	Third green 2	0.073
	CRR073308	Third green 3	0.314
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.043
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.166
	CRR073314	Silver flowering 3	0.363
	CRR073315	Gold flowering 1	0.100
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.199
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000