Gene detail

Detail information of GWHGAAZE027027

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010069705.1	0	PREDICTED: LOW QUALITY PROTEIN: acetyl-CoA acetyltransferase, cytosolic 1-like [Eucalyptus grandis]
COG	YP_003585115.1	3E-152	acetoacetyl-CoA thiolase
Swissprot	tr\|Q8S4Y1\|THIC1_ARATH	0	Acetyl-CoA acetyltransferase, cytosolic 1
trEMBL	tr\|M5WS77\|M5WS77_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ16667.1}
TAIR10	AT5G48230.2	0	acetoacetyl-CoA thiolase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13666955	13673717	+
GWHAAZE00000008	mRNA	13666955	13673717	+
GWHAAZE00000008	exon	13666955	13667005	+
GWHAAZE00000008	exon	13667208	13667434	+
GWHAAZE00000008	exon	13667987	13668055	+
GWHAAZE00000008	exon	13668876	13668974	+
GWHAAZE00000008	exon	13669081	13669254	+
GWHAAZE00000008	exon	13669381	13669486	+
GWHAAZE00000008	exon	13671330	13671468	+
GWHAAZE00000008	exon	13671592	13671669	+
GWHAAZE00000008	exon	13672217	13672282	+
GWHAAZE00000008	exon	13672460	13672545	+
GWHAAZE00000008	exon	13672682	13672781	+
GWHAAZE00000008	exon	13672905	13673015	+
GWHAAZE00000008	exon	13673292	13673378	+
GWHAAZE00000008	exon	13673628	13673717	+
GWHAAZE00000008	five_prime_UTR	13666955	13667005	+
GWHAAZE00000008	five_prime_UTR	13667208	13667434	+
GWHAAZE00000008	five_prime_UTR	13667987	13668009	+
GWHAAZE00000008	CDS	13668010	13668055	+
GWHAAZE00000008	CDS	13668876	13668974	+
GWHAAZE00000008	CDS	13669081	13669254	+
GWHAAZE00000008	CDS	13669381	13669486	+
GWHAAZE00000008	CDS	13671330	13671468	+
GWHAAZE00000008	CDS	13671592	13671669	+
GWHAAZE00000008	CDS	13672217	13672282	+
GWHAAZE00000008	CDS	13672460	13672545	+
GWHAAZE00000008	CDS	13672682	13672781	+
GWHAAZE00000008	CDS	13672905	13673015	+
GWHAAZE00000008	CDS	13673292	13673378	+
GWHAAZE00000008	CDS	13673628	13673717	+

Transcript Sequence
>GWHTAAZE027061 GTCAATAAAGCCGGGTTTAAATTATTTATATCCAATATAAACTTTTTCTAGTATTTGTGCAGAATTACTTGGGCATACTTTAATTAATTCGGGTCCGGTCGATCTGGGAGCTCCCAATTCAATTCAGACTCAGCGTTGATATCCACTGCGCCACTTTTGTCGTGTAGCTTGAAGACTGTATCTCTATATATATAAATCCGTATGAGTTCGGTTTCCACCTAACCATCTCTTTCTGCTTCAATTCAAGCTCCTTTTCTTTCAGTTTTCAAATCACACAGATATCCATTTGCATATATTAATCATGATGTCTCCAGCGGCAGATTCCTCTGAGTCAATTAAGCCTAGAGATGTCTGTGTTGTTGGTGTTGCACGTACGCCAATGGGTGGCTTTCTTGGTCATCTTTCATCTGTACCAGCCACTAAACTTGGTTCCATAGCAATTGAAAGTGCTCTTAAAAGGGCTAATGTTGATCCATCACTTGTACAAGAAGTTATCTTTGGAAATGTTCTCAGTGCAAATTTGGGTCAGGCTCCCGCCAGACAAGCAGCACTAGGGGCAGGAATACCTAATACAGTGGCTTGTACCACTGTTAACAAAGTTTGTGCATCAGGGATGAAAGCGACTATGCTTGCAGCACAGACTATCCAGTTAGGCATAAATGATGTTGTTGTGGCTGGTGGCATGGAAAGCATGTCCAATGTCCCTAAATACCTAGCAGAAGCAAGAAAGGGATCTCGACTCGGACATGATTCTCTTGTTGATGGAATGCTAAAAGATGGTTTGTGGGATGTTTATAATGACTATGGGATGGGAGTTTGTGCTGAATTATGTGCTGATACACATGAAATAACAAGAGAGGAGCAGGATAACTACGCGATTCAGAGCTTTGAGCGTGGTATTGCTGCACAAGATGCTGGTGCCTTCACATGGGAAATAGCTTCAGTTGAAGTTCCTGGGGGAAGAGGGAGACCATCCACAATTGTTGATAAGGATGAAGGTTTAGGAAAGTTTGATGCTGCTAAGTTGAGGAAACTCCGGCCAAGTTTCAAGGAGAGTGGTGGCAGTGTTACTGCTGGCAATGCTTCAAGTATTAGTGATGGTGCTGCTGCTTTAGTCTTGGTTAGTGGAGAGAAGGCACTTAAACTTGGGTTGAAAGTTATTGCAAAGATCTCAGGATATGCTGATGCCGCTCAGGCACCAGAGTTATTTACAACTGCTCCAGCCCTTGCGATACCGAAAGCTATTTCTAACGCTGGCATAGAGGCCTCTCAAGTTGATTACTATGAAATCAATGAAGCCTTTGCTGAGAAAGTAAATGTGCATGGTGGAGCTGTATCCTTGGGGCATCCCCTAGGTTGCAGTGGAGCCCGTATCTTGGTCACCCTTTTGGGGGTACTGAGGCAGAAGAATGGGAAATACGGAGTGGGTGGTGTATGCAACGGAGGAGGAGGTGCATCAGCCCTTGTAGTAGAGCTTCTGTAG

Network for GWHGAAZE027027

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00108.24	Thiolase_N	17	275	2.30E-90
PF02803.19	Thiolase_C	285	391	1.10E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00626	ACAT, atoB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Fatty acid metabolism	map01212
		Pyruvate metabolism	map00620
		Glyoxylate and dicarboxylate metabolism	map00630
		Propanoate metabolism	map00640
		Butanoate metabolism	map00650
		Carbon fixation pathways in prokaryotes	map00720
		Fatty acid degradation	map00071
		Synthesis and degradation of ketone bodies	map00072
		Valine, leucine and isoleucine degradation	map00280
		Lysine degradation	map00310
		Tryptophan metabolism	map00380
		Terpenoid backbone biosynthesis	map00900
		Benzoate degradation	map00362
		Two-component system	map02020
		Fat digestion and absorption	map04975

Gene Ontology

GO term	Ontology	Name
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.910
	SRR3591706	second leaf	17.341
	SRR3591707	mature leaf	6.993
	SRR3591708	Shoot apex	26.344
	SRR3591709	Stem	20.130
	SRR3591710	White floral bud	98.849
	SRR3591711	White flower	76.302
	SRR3591712	Green floral bud	34.130
	SRR3591713	Yellow flower	72.280
SRP173429	SRR8316895	Juvenile bud stage	21.832
	SRR8316896	Juvenile bud stage	32.351
	SRR8316897	Juvenile bud stage	16.700
	SRR8316894	Third green stage	12.776
	SRR8316900	Third green stage	22.010
	SRR8316901	Third green stage	19.866
	SRR8316898	Complete white stage	18.830
	SRR8316899	Complete white stage	17.837
	SRR8316903	Complete white stage	31.490
	SRR8316902	Silver flowering stage	35.554
	SRR8316904	Silver flowering stage	56.580
	SRR8316905	Silver flowering stage	33.035
	SRR8316906	Gold flowering stage	123.385
	SRR8316907	Gold flowering stage	100.799
	SRR8316908	Gold flowering stage	151.723
SRP132670	SRR6706286	Control	22.693
	SRR6706287	Light intensity 50%	26.419
	SRR6706288	Light intensity 20%	27.248
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.796
	CNS0095593	Slightly white alabastrum(diploid) 2	12.289
	CNS0095594	Slightly white alabastrum(diploid) 3	15.340
	CNS0095595	Whole white alabastrum(diploid) 2	10.391
	CNS0095596	Whole white alabastrum(diploid) 3	10.528
	CNS0095597	Whole white alabastrum(diploid) 4	8.367
	CNS0095598	Silvery flower (diploied) 1	27.666
	CNS0095599	Silvery flower (diploied) 2	24.338
	CNS0095600	Silvery flower (diploied) 3	39.718
	CNS0095601	Golden flower (diploid) 1	18.562
	CNS0095602	Golden flower (diploid) 2	28.162
	CNS0095603	Golden flower (diploid) 3	27.145
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.009
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.453
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.236
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.563
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.341
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.098
	CNS0095610	Silvery flower (tetraploid) 1	66.347
	CNS0095611	Silvery flower (tetraploid) 2	58.646
	CNS0095612	Silvery flower (tetraploid) 3	88.839
	CNS0095613	Golden flower (tetraploid) 1	60.063
	CNS0095614	Golden flower (tetraploid) 2	69.782
	CNS0095615	Golden flower (tetraploid) 3	99.676
CRA001975	CRR073297	Stem 1	35.685
	CRR073298	Stem 2	30.500
	CRR073299	Stem 3	32.500
	CRR073300	Leaf 1	26.996
	CRR073301	Leaf 2	28.276
	CRR073302	Leaf 3	24.699
	CRR073303	Juvenile bud 1	15.215
	CRR073304	Juvenile bud 2	21.521
	CRR073305	Juvenile bud 3	18.815
	CRR073306	Third green 1	42.102
	CRR073307	Third green 2	48.019
	CRR073308	Third green 3	45.713
	CRR073309	Second white 1	40.296
	CRR073310	Second white 2	46.237
	CRR073311	Second white 3	49.711
	CRR073312	Silver flowering 1	54.901
	CRR073313	Silver flowering 2	50.279
	CRR073314	Silver flowering 3	40.541
	CRR073315	Gold flowering 1	8.706
	CRR073316	Gold flowering 2	9.878
	CRR073317	Gold flowering 3	10.054
	CRR073318	Tawny withering 1	30.654
	CRR073319	Tawny withering 2	35.795
	CRR073320	Tawny withering 3	28.126