Gene detail

Detail information of GWHGAAZE027013

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008365551.1	0	PREDICTED: glucose-6-phosphate 1-dehydrogenase, chloroplastic-like [Malus domestica]
COG	YP_005442949.1	1E-77	glucose-6-phosphate 1-dehydrogenase
Swissprot	tr\|Q43839\|G6PDC_SOLTU	0	Glucose-6-phosphate 1-dehydrogenase, chloroplastic (Precursor)
trEMBL	tr\|B9SW52\|B9SW52_RICCO	0	Glucose-6-phosphate 1-dehydrogenase {ECO:0000256\|RuleBase:RU000497}
TAIR10	AT5G35790.1	0	glucose-6-phosphate dehydrogenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13525295	13529059	-
GWHAAZE00000008	mRNA	13525295	13529059	-
GWHAAZE00000008	exon	13525295	13525517	-
GWHAAZE00000008	exon	13525625	13525854	-
GWHAAZE00000008	exon	13526308	13526467	-
GWHAAZE00000008	exon	13526588	13526766	-
GWHAAZE00000008	exon	13527333	13527447	-
GWHAAZE00000008	exon	13527538	13527632	-
GWHAAZE00000008	exon	13527769	13527923	-
GWHAAZE00000008	exon	13528837	13529059	-
GWHAAZE00000008	CDS	13528837	13529059	-
GWHAAZE00000008	CDS	13527769	13527923	-
GWHAAZE00000008	CDS	13527538	13527632	-
GWHAAZE00000008	CDS	13527333	13527447	-
GWHAAZE00000008	CDS	13526588	13526766	-
GWHAAZE00000008	CDS	13526308	13526467	-
GWHAAZE00000008	CDS	13525625	13525854	-
GWHAAZE00000008	CDS	13525295	13525517	-

Transcript Sequence
>GWHTAAZE027047 ATGGCTAAACAATGGGGTCATTGTTCTTCTTCCTCCTCCGCCACATTTTCACCTCCTCCATTCAAGAATCAGAGGCACCACTTCACAAAATTTAACATCTTGCCAACAAGAACCTGTTTATCCAAATGGGCCTCTCAAATTCGTTCCATAATCCACCCAAGGGACCATTTTGAGCTCAAAACCTCTAATGGGTATCCTCTAAATGCTGTTTCTTTTCAAGATGCTGGAAAATCGCTGACCAAAGAACTTCCATTATCAGAATTAGGAAAAGCAGAATCCAATCTCAGCATTACTGTTGTTGGTGCTTCTGGGGACCTTGCCAAGAAGAAGATTTTTCCTGCACTTTTTGCTCTTTATTATGAGGATTGTCTACCTGAGAATTTTACAGTTTTTGGTTATGCCCGAACAAAAATGACTGATGAGGAGCTGAGAAACATGATTAGCAGAACCTTAACTTGCAGAATCGATAAAAGAGAAAACTGTGAAGACAAAATGGACCAGTTCCTAAAAAGATGCTTTTACCATTCGGGTCAATATGACTCTGAGGAGCATTTCTCCGAACTGGACATCAAGATGAAGGAGAAAGAGGCTGGAAAAATGTCAAATAGGCTCTTTTACTTGTCAATACCTCCAAACATATTTGTGGATGTGGTGAGATGTGTTAGTGTTAAAGCTTCTTCAACAAATGGGTGGACAAGGGTCATCGTTGAAAAGCCATTCGGTCGTGACTTTAAGTCATCTGGGGAACTCACCAGATCTCTGAAGCAGATTGACCATTACTTGGGGAAGGAGCTTGTTGAGAATCTATCAGTGCTTCGTTTTTCAAATCTTGTTTTTGAGCCTCTTTGGTCCAGGAATTACATCCGTAATGTTCAGTTGATATTTTCTGAAGATTTTGGTACAGAAGGAAGAGGAGGGTGGGTTTCCGTCAAAGTTTTAAGGTCAATGAGAATGCTGCAGCTTGACGATGTCGTTGTAGGACAATATAAGGGCCACAGCAAAGGTGGTAAATTGTATCCAGGATATACAGACGATTCTACTGTACCGAAGGACAGTCTTACTCCAACTTTTGCAGCAGCAGCACTCTTTATTGATAATGCCCGTTGGGACGGGGTTCCGTTTCTTATGAAAGCTGGCAAGGCTCTCCATACTAAGCGAGCGGAGATAAGAGTTCAGTTTAGACATGTTCCTGGTAACTTGTACAAGAGAAACTTTGGGACTGATTTGGATAAGGCTACAAATGAGCTAGTGCTTCGGGTACAACCTGATGAAGCCATATTTCTGAAAATCAACAACAAGGTTCCTGGTCTTGGAATGAGACTGGACCGCAGCGACCTTAATTTGCTTTACAGCACAAGGTACATTACATATTATGATTAA

Network for GWHGAAZE027013

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00479.23	G6PD_N	99	268	2.10E-49
PF02781.17	G6PD_C	271	307	1.60E-09
PF02781.17	G6PD_C	310	454	1.40E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00036	G6PD, zwf	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pentose phosphate pathway	map00030
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0006006	biological_process	glucose metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0004345	molecular_function	glucose-6-phosphate dehydrogenase activity
GO:0016614	molecular_function	oxidoreductase activity, acting on CH-OH group of donors
GO:0050661	molecular_function	NADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	72.334
	SRR3591706	second leaf	51.112
	SRR3591707	mature leaf	62.826
	SRR3591708	Shoot apex	59.011
	SRR3591709	Stem	71.239
	SRR3591710	White floral bud	28.637
	SRR3591711	White flower	27.697
	SRR3591712	Green floral bud	30.962
	SRR3591713	Yellow flower	12.283
SRP173429	SRR8316895	Juvenile bud stage	27.139
	SRR8316896	Juvenile bud stage	32.786
	SRR8316897	Juvenile bud stage	25.240
	SRR8316894	Third green stage	15.480
	SRR8316900	Third green stage	33.414
	SRR8316901	Third green stage	25.960
	SRR8316898	Complete white stage	5.042
	SRR8316899	Complete white stage	31.092
	SRR8316903	Complete white stage	11.268
	SRR8316902	Silver flowering stage	2.704
	SRR8316904	Silver flowering stage	4.526
	SRR8316905	Silver flowering stage	1.288
	SRR8316906	Gold flowering stage	2.972
	SRR8316907	Gold flowering stage	4.027
	SRR8316908	Gold flowering stage	7.885
SRP132670	SRR6706286	Control	20.935
	SRR6706287	Light intensity 50%	16.971
	SRR6706288	Light intensity 20%	19.070
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.112
	CNS0095593	Slightly white alabastrum(diploid) 2	21.871
	CNS0095594	Slightly white alabastrum(diploid) 3	16.000
	CNS0095595	Whole white alabastrum(diploid) 2	18.700
	CNS0095596	Whole white alabastrum(diploid) 3	16.195
	CNS0095597	Whole white alabastrum(diploid) 4	16.031
	CNS0095598	Silvery flower (diploied) 1	57.886
	CNS0095599	Silvery flower (diploied) 2	44.653
	CNS0095600	Silvery flower (diploied) 3	21.906
	CNS0095601	Golden flower (diploid) 1	47.534
	CNS0095602	Golden flower (diploid) 2	39.922
	CNS0095603	Golden flower (diploid) 3	39.054
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.130
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.231
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.339
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.363
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.894
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.111
	CNS0095610	Silvery flower (tetraploid) 1	21.974
	CNS0095611	Silvery flower (tetraploid) 2	35.661
	CNS0095612	Silvery flower (tetraploid) 3	14.478
	CNS0095613	Golden flower (tetraploid) 1	11.825
	CNS0095614	Golden flower (tetraploid) 2	20.611
	CNS0095615	Golden flower (tetraploid) 3	5.048
CRA001975	CRR073297	Stem 1	25.229
	CRR073298	Stem 2	24.424
	CRR073299	Stem 3	14.974
	CRR073300	Leaf 1	13.295
	CRR073301	Leaf 2	16.605
	CRR073302	Leaf 3	7.839
	CRR073303	Juvenile bud 1	8.362
	CRR073304	Juvenile bud 2	3.269
	CRR073305	Juvenile bud 3	11.163
	CRR073306	Third green 1	0.345
	CRR073307	Third green 2	0.315
	CRR073308	Third green 3	1.749
	CRR073309	Second white 1	1.092
	CRR073310	Second white 2	0.907
	CRR073311	Second white 3	0.560
	CRR073312	Silver flowering 1	0.153
	CRR073313	Silver flowering 2	0.539
	CRR073314	Silver flowering 3	0.249
	CRR073315	Gold flowering 1	45.899
	CRR073316	Gold flowering 2	64.688
	CRR073317	Gold flowering 3	27.404
	CRR073318	Tawny withering 1	19.934
	CRR073319	Tawny withering 2	23.527
	CRR073320	Tawny withering 3	23.091