Gene detail

Detail information of GWHGAAZE027011

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011085400.1	0	PREDICTED: transcriptional adapter ADA2-like isoform X1 [Sesamum indicum]
Swissprot	tr\|Q75LL6\|TADA2_ORYSJ	0	Transcriptional adapter ADA2
trEMBL	tr\|A0A068V9T7\|A0A068V9T7_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_160 {ECO:0000313\|EMBL:CDP17436.1}
TAIR10	AT3G07740.1	4E-159	homolog of yeast ADA2 2A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13514360	13520600	+
GWHAAZE00000008	mRNA	13514360	13520600	+
GWHAAZE00000008	exon	13514360	13514490	+
GWHAAZE00000008	exon	13514572	13514771	+
GWHAAZE00000008	exon	13516610	13516693	+
GWHAAZE00000008	exon	13516912	13517087	+
GWHAAZE00000008	exon	13517494	13517559	+
GWHAAZE00000008	exon	13517682	13517807	+
GWHAAZE00000008	exon	13517900	13517975	+
GWHAAZE00000008	exon	13518139	13518199	+
GWHAAZE00000008	exon	13518284	13518342	+
GWHAAZE00000008	exon	13518453	13518557	+
GWHAAZE00000008	exon	13518641	13518860	+
GWHAAZE00000008	exon	13519388	13519598	+
GWHAAZE00000008	exon	13519948	13520265	+
GWHAAZE00000008	exon	13520409	13520600	+
GWHAAZE00000008	CDS	13514360	13514490	+
GWHAAZE00000008	CDS	13514572	13514771	+
GWHAAZE00000008	CDS	13516610	13516693	+
GWHAAZE00000008	CDS	13516912	13517087	+
GWHAAZE00000008	CDS	13517494	13517559	+
GWHAAZE00000008	CDS	13517682	13517807	+
GWHAAZE00000008	CDS	13517900	13517975	+
GWHAAZE00000008	CDS	13518139	13518199	+
GWHAAZE00000008	CDS	13518284	13518342	+
GWHAAZE00000008	CDS	13518453	13518557	+
GWHAAZE00000008	CDS	13518641	13518860	+
GWHAAZE00000008	CDS	13519388	13519598	+
GWHAAZE00000008	CDS	13519948	13520265	+
GWHAAZE00000008	CDS	13520409	13520600	+

Transcript Sequence
>GWHTAAZE027045 ATGACAGAGTTCATCACTGCTGCAGAATCTTTAACAGCCAACAGCCCACCACAGTTGCACATCATCCCTGTTGCCGCAACATCACCGTTGCTAATTATCGTGGCAAGCAAGATTGCAATCCCTTGTCACCGACAATCACCACCAGTCTCATCTCACCTTAAAACGCCCCGCAGTGTCTCTGCAAGTTGTCAGAGTATCCATTGTCAATTGCTTTTCCATTTTCTTTATTGTGCCGCTGTTAACCATGTTGAAAGGCCTAGATTACTGCTTGAAGGTGATCAGATAGTGAAGGAGTCTGTTTCCCGACCCACTTTGTTTTTACCAGATACAGCCTTTTATTTCCTTATGATCTTCAGCCGGTCAAAAAGGAAACGGACTGCTTCAAATGTCGAGAATTTAGAGGCTGCAACTGCAGGTCAAGGGATGAGTGAAGGGAAGGCTTTATACCACTGCAACTATTGCAACAAAGATATCTCTGGAAAGATACGCATCAAGTGTGCAGTCTGTTCCGATTTTGATCTTTGTGTGGAGTGCTTTTCTGTAGGAGCTGAGGTTAATCCTCACAAAAGCAATCATCCATATAGGGTTATGGATAATTTGTCGTTTCCACTCATTTGTCCTGACTGGAATGCAGATGAGGAGATACTACTGCTAGAGGGTATTGAAATGTACGGATTGGGGAACTGGACTGAGGTTGCAGAGCATGTCGGAACAAAAAGCAAATCACAATGTATTGACCACTACAATACTATTTATATGACCTCACCTTGCTTTCCACTTCCGGACATGTCTCATGTTATGGGAAAGAACAGAGAGGAGCTCCTTGCCATGGCCAAAGGACACAGTGAAGCCAAGAAAGGATTTCCTACGCTTGGGGATCTTACTGTAAAAGAAGAGTCTCCATATTCTGCGAGAATCAAGGTTGAAGATCAAAGAAAAGAAGGTCCAGTAGGTCGATCATCATCTAACTTAACTTCTGAGGCAGGTTCTGGTGCAGGTTCTAGTAATGGCAACACTTCACCAGAGGCAGTCAAGAGGGTATCCAGCGTAGTCCAGAGTAAGGATGATGTCATTAAAGTGGAAGATTCTCATGCAGACCGAAGTGTTGGGGAGAAAAAACCAAGGACTTCAGGGGATGAAGGTCCTCCTATAGAGTTAAGTGGCTATAATTCCAAGAGGCAAGAGTTTGAAATTGAATATGATAATGACGCTGAGCAACTACTGGCAGATATGGAATTCAAGGACACAGATACTGATGCTGAACGTGAAATTAAACTATGGGTGTTGCGAATTTACTCAAAAAGGCTTGATGAGAGGAAACGGAGGAAAGATTTTATACTAGAAAGAAATTTACTTTACCCTGATCCTTTTCAGAAGGACCTCTCACCTGAAGAAAGGGAAATATGTCAGCGCTACAGGGTTTTCATGCGTTTCCATTCGAAAGAGGAGCATGAGGAATTGCTCAAGAGTGTTATTGAAGAGCATCGGATTTTGAAAAGAATACAAGATCTTCAGGAAGCTCGAGCTTCTGGGTGCCGTACATCTGCTGATGCTGAAATATACATTGAACGTAAGAGAAAGAGGGAAGCTGAAGAAAATGCCCGTAGGGTGAAGGAGAATTCACAGGTGGGTCCCAGTGGTAAATTTCTGCAAAGGGCGAATCATCTGAAAGGAGAAATTGATAGTAGCCCTCGAGGAGGTGTTAGGGCACCCATGGTTTTAGATTCAAGTGGCAAGGACTCTTCTTCAACACCTGCTGGACTAGGTTTTTCGAATCCCTTGGATGATTGGGATGTCACTGGACTTGTAGGAGCTGAATTATTATCTGAAGCTGAGAAACAGCTTTGTGGTGAAATCAAGATCCTCCCTGCGCATTATCTCAATATGCTACAGACCATGTCAGTGGAGGCTTTCAATGGCAACATCACGAAGAAATCAGATGCACATGGCTTGTTCAACGTTGATCCAAGCAAGGTGGATAGAGTGTATGATATGCTTGTTAAAAAGGGGATGGCTCGCCCATGA

Network for GWHGAAZE027011

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00569.18	ZZ	149	189	3.00E-09
PF00249.32	Myb_DNA-binding	208	250	8.70E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.779
	SRR3591706	second leaf	10.718
	SRR3591707	mature leaf	8.917
	SRR3591708	Shoot apex	20.504
	SRR3591709	Stem	14.417
	SRR3591710	White floral bud	12.928
	SRR3591711	White flower	13.491
	SRR3591712	Green floral bud	11.521
	SRR3591713	Yellow flower	12.916
SRP173429	SRR8316895	Juvenile bud stage	12.253
	SRR8316896	Juvenile bud stage	17.725
	SRR8316897	Juvenile bud stage	7.513
	SRR8316894	Third green stage	6.852
	SRR8316900	Third green stage	13.956
	SRR8316901	Third green stage	13.664
	SRR8316898	Complete white stage	6.871
	SRR8316899	Complete white stage	18.191
	SRR8316903	Complete white stage	13.300
	SRR8316902	Silver flowering stage	5.906
	SRR8316904	Silver flowering stage	9.356
	SRR8316905	Silver flowering stage	4.527
	SRR8316906	Gold flowering stage	12.790
	SRR8316907	Gold flowering stage	12.904
	SRR8316908	Gold flowering stage	13.213
SRP132670	SRR6706286	Control	8.170
	SRR6706287	Light intensity 50%	9.871
	SRR6706288	Light intensity 20%	10.319
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.128
	CNS0095593	Slightly white alabastrum(diploid) 2	11.256
	CNS0095594	Slightly white alabastrum(diploid) 3	9.224
	CNS0095595	Whole white alabastrum(diploid) 2	10.307
	CNS0095596	Whole white alabastrum(diploid) 3	6.748
	CNS0095597	Whole white alabastrum(diploid) 4	8.686
	CNS0095598	Silvery flower (diploied) 1	15.839
	CNS0095599	Silvery flower (diploied) 2	11.322
	CNS0095600	Silvery flower (diploied) 3	8.687
	CNS0095601	Golden flower (diploid) 1	13.820
	CNS0095602	Golden flower (diploid) 2	9.175
	CNS0095603	Golden flower (diploid) 3	9.992
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.995
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.906
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.089
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.920
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.592
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.825
	CNS0095610	Silvery flower (tetraploid) 1	15.292
	CNS0095611	Silvery flower (tetraploid) 2	8.808
	CNS0095612	Silvery flower (tetraploid) 3	12.745
	CNS0095613	Golden flower (tetraploid) 1	10.415
	CNS0095614	Golden flower (tetraploid) 2	12.411
	CNS0095615	Golden flower (tetraploid) 3	10.863
CRA001975	CRR073297	Stem 1	14.958
	CRR073298	Stem 2	11.879
	CRR073299	Stem 3	5.926
	CRR073300	Leaf 1	12.266
	CRR073301	Leaf 2	10.940
	CRR073302	Leaf 3	4.150
	CRR073303	Juvenile bud 1	3.828
	CRR073304	Juvenile bud 2	2.133
	CRR073305	Juvenile bud 3	4.381
	CRR073306	Third green 1	2.384
	CRR073307	Third green 2	0.960
	CRR073308	Third green 3	3.361
	CRR073309	Second white 1	2.192
	CRR073310	Second white 2	4.955
	CRR073311	Second white 3	3.815
	CRR073312	Silver flowering 1	2.518
	CRR073313	Silver flowering 2	1.183
	CRR073314	Silver flowering 3	1.801
	CRR073315	Gold flowering 1	2.745
	CRR073316	Gold flowering 2	5.851
	CRR073317	Gold flowering 3	1.864
	CRR073318	Tawny withering 1	6.085
	CRR073319	Tawny withering 2	6.779
	CRR073320	Tawny withering 3	5.672