Gene detail

Detail information of GWHGAAZE027003

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFJ25031.1	0	chlorophyll a/b binding protein [Lonicera japonica]
Swissprot	tr\|P27494\|CB23_TOBAC	0	Chlorophyll a-b binding protein 36, chloroplastic (Precursor)
trEMBL	tr\|I1ZJ07\|I1ZJ07_LONJA	0	Chlorophyll a/b binding protein {ECO:0000313\|EMBL:AFJ25031.1}
TAIR10	AT2G05100.1	1E-141	photosystem II light harvesting complex gene 2.1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13433650	13435058	+
GWHAAZE00000008	mRNA	13433650	13435058	+
GWHAAZE00000008	exon	13433650	13433795	+
GWHAAZE00000008	exon	13434407	13435058	+
GWHAAZE00000008	CDS	13433650	13433795	+
GWHAAZE00000008	CDS	13434407	13435058	+

Transcript Sequence
>GWHTAAZE027037 ATGGCAACCTCTGCAATCCAACATTCTGCTTTTGCAGGCCAGACGGTTTTGAAGCAGCAGAACGAGCTTGTCCGCAAGGTTGGCAGCTTCGGCAGCAGCCGTACCACCATGAGGCGTACGGTCAAAAGCACCCCACAAAGCATTTGGTACGGACCCGACCGTCCCAAGTACTTGGGCCCATTCTCTGAGCAAACCCCGTCATACTTGACTGGTGAATTCCCCGGCGACTATGGGTGGGACACCGCTGGACTATCAGCTGACCCAGAAACATTTGCCAAGAACCGTGAACTCGAGGTGATTCACAGCCGATGGGCCATGCTCGGTGCATTGGGCTGCGTGTTCCCAGAAATCTTGGCTAAGAATGGTGTCAAGTTTGGTGAGGCAGTCTGGTTCAAGGCCGGGTCCCAAATCTTCTCAGAAGGTGGCCTAGACTATTTGGGCAACCCTAACCTTGTCCATGCCCAAAGTATCCTCGCCATTTGGGCCTCCCAAGTTGTCCTGATGGGCTTAATCGAGGGTTACCGCATTGGTGGGGGGCCACTTGGTGAAGGGCTCGATTCACTCTACCCGGGTGGGGCCTTTGACCCGTTGGGATTGGCTGATGATCCCGAGGCGTTTGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTTTCGATGTTTGGGTTCTTTGTTCAGGCCATTGTGACCGGAAAGGGGCCCGTTGAAAACCTATACGACCACCTTGCTGATCCAGTTGCAAACAATGCGTGGGCTTATGCCACTAACTTTGTACCCGGAAAGTGA

Network for GWHGAAZE027003

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	66	231	2.90E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08913	LHCB2	Metabolic pathways	map01100
K08913	LHCB2	Photosynthesis - antenna proteins	map00196

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3632.752
	SRR3591706	second leaf	23678.330
	SRR3591707	mature leaf	17230.291
	SRR3591708	Shoot apex	11892.491
	SRR3591709	Stem	2792.907
	SRR3591710	White floral bud	335.939
	SRR3591711	White flower	604.013
	SRR3591712	Green floral bud	290.677
	SRR3591713	Yellow flower	158.175
SRP173429	SRR8316895	Juvenile bud stage	1279.392
	SRR8316896	Juvenile bud stage	890.759
	SRR8316897	Juvenile bud stage	703.562
	SRR8316894	Third green stage	249.477
	SRR8316900	Third green stage	369.795
	SRR8316901	Third green stage	324.278
	SRR8316898	Complete white stage	67.443
	SRR8316899	Complete white stage	236.202
	SRR8316903	Complete white stage	187.523
	SRR8316902	Silver flowering stage	36.283
	SRR8316904	Silver flowering stage	55.064
	SRR8316905	Silver flowering stage	15.182
	SRR8316906	Gold flowering stage	67.821
	SRR8316907	Gold flowering stage	79.021
	SRR8316908	Gold flowering stage	116.011
SRP132670	SRR6706286	Control	811.886
	SRR6706287	Light intensity 50%	442.452
	SRR6706288	Light intensity 20%	384.398
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1473.102
	CNS0095593	Slightly white alabastrum(diploid) 2	746.951
	CNS0095594	Slightly white alabastrum(diploid) 3	995.650
	CNS0095595	Whole white alabastrum(diploid) 2	444.136
	CNS0095596	Whole white alabastrum(diploid) 3	489.933
	CNS0095597	Whole white alabastrum(diploid) 4	281.956
	CNS0095598	Silvery flower (diploied) 1	2679.612
	CNS0095599	Silvery flower (diploied) 2	2448.635
	CNS0095600	Silvery flower (diploied) 3	545.805
	CNS0095601	Golden flower (diploid) 1	2440.506
	CNS0095602	Golden flower (diploid) 2	1368.376
	CNS0095603	Golden flower (diploid) 3	1353.740
	CNS0095604	Slightly white alabastrum(tetraploid) 1	874.088
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1136.973
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1323.536
	CNS0095607	Whole white alabastrum(tetraploid) 1	315.577
	CNS0095608	Whole white alabastrum(tetraploid) 2	215.562
	CNS0095609	Whole white alabastrum(tetraploid) 3	443.042
	CNS0095610	Silvery flower (tetraploid) 1	609.317
	CNS0095611	Silvery flower (tetraploid) 2	1274.518
	CNS0095612	Silvery flower (tetraploid) 3	154.021
	CNS0095613	Golden flower (tetraploid) 1	219.629
	CNS0095614	Golden flower (tetraploid) 2	619.516
	CNS0095615	Golden flower (tetraploid) 3	211.691
CRA001975	CRR073297	Stem 1	331.105
	CRR073298	Stem 2	249.146
	CRR073299	Stem 3	559.779
	CRR073300	Leaf 1	35.193
	CRR073301	Leaf 2	43.693
	CRR073302	Leaf 3	62.392
	CRR073303	Juvenile bud 1	26.364
	CRR073304	Juvenile bud 2	28.583
	CRR073305	Juvenile bud 3	41.027
	CRR073306	Third green 1	8.696
	CRR073307	Third green 2	14.648
	CRR073308	Third green 3	16.444
	CRR073309	Second white 1	30.148
	CRR073310	Second white 2	10.010
	CRR073311	Second white 3	7.276
	CRR073312	Silver flowering 1	21.105
	CRR073313	Silver flowering 2	32.919
	CRR073314	Silver flowering 3	29.934
	CRR073315	Gold flowering 1	2205.834
	CRR073316	Gold flowering 2	1324.463
	CRR073317	Gold flowering 3	1730.960
	CRR073318	Tawny withering 1	280.901
	CRR073319	Tawny withering 2	215.287
	CRR073320	Tawny withering 3	214.982