Gene detail

Detail information of GWHGAAZE027002

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002272021.1	PREDICTED: nuclear pore complex protein NUP133 [Vitis vinifera]
Swissprot	tr\|F4IGA5\|NU133_ARATH	Nuclear pore complex protein NUP133 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|A0A068VC86\|A0A068VC86_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_229 {ECO:0000313\|EMBL:CDP18351.1}
TAIR10	AT2G05120.1	Nucleoporin, Nup133/Nup155-like

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13424196	13432520	+
GWHAAZE00000008	mRNA	13424196	13432520	+
GWHAAZE00000008	exon	13424196	13424496	+
GWHAAZE00000008	exon	13425403	13425527	+
GWHAAZE00000008	exon	13425602	13427425	+
GWHAAZE00000008	exon	13428192	13428913	+
GWHAAZE00000008	exon	13429787	13429939	+
GWHAAZE00000008	exon	13430194	13430527	+
GWHAAZE00000008	exon	13431281	13431348	+
GWHAAZE00000008	exon	13431975	13432520	+
GWHAAZE00000008	five_prime_UTR	13424196	13424302	+
GWHAAZE00000008	CDS	13424303	13424496	+
GWHAAZE00000008	CDS	13425403	13425527	+
GWHAAZE00000008	CDS	13425602	13427425	+
GWHAAZE00000008	CDS	13428192	13428913	+
GWHAAZE00000008	CDS	13429787	13429939	+
GWHAAZE00000008	CDS	13430194	13430527	+
GWHAAZE00000008	CDS	13431281	13431348	+
GWHAAZE00000008	CDS	13431975	13432520	+

Transcript Sequence
>GWHTAAZE027036 CACGTCAAATACTCTCCATTTCTTCTCACTCAAAAACCATAAACCCTAAATCTCTGTCCCTCCCACCAACACCTCTAAACTTGAAACTCACACTCAATCAGTCAGCAATGTTCTCCCCTGGAACGAAGAAATCCAATTTCAGCGCTCGAAAGGAGCGTACTCATCTACATACAGCACCGCCTGATTCACCGATAACACCACTTGCAGAGAATCAAAGATCGATTCACGACAGTTCAATCCCTAATCGCCCTAGCACTGGCACCCCCGCTCCCTGGGCTTCTCGTTTATCTGTTCTCGCTAGAATCCCACCCGCGAGGAAAAGTGAGAAAGGGGATGAAATAGATCCTATTCAGCCCATTTATGTTGGGGAGTTTCCACAAGTGGTCCGTGATGAACAAACCAGTTTCCTGCAGAAGCGTGTTCCTGGTGGTGCATGGATATCTGGTGGAATGGACAGCGAGACCTCACTGGCATGGATGATTTGTGGAAATAGACTTTTTATCTGGAGTTTCTTATCTCCTGCATCTTCAAGAAAATGTGTTGATCTTGATATTCCTACAAACGTATCAGAAAATGGAGATATTACTAGAACTTCAGGTCATGGTAACAACTGGTTACTTTGTGTTCTCAATTGGAATAGCACAAACAAGGGTGCAAATAAAATTGTTCAACAGTGCAACTCTGCTGGTATCATTTTATTTAATCAGAAAACTCGAGCTCTTATATACTGGCCAGACATTTATTCTGAAAGTGGGACTATTCCAGTTACCAATACCGATGACTTAGCGGTGACCTTTTCACCCGGTGATGGGAAAACTACTCCAAACAAGCAGTGGTCACGTGGCAGGCCTACAAGTAATTCAATGGGATCAAGTTATTTTAACTCTCTGATTGCTTCAGTTATCCCTGATATGCATAACACCTGTATTGCTCTTGCATGTACTTCGAATGGTGAGCTTTGGAAGTTCCTCTGCAGCCCCACTTTTATTCAGCGTGAAAGAATATTTGAGGACATGTTGTGTGATGGTGGCCAACAACTTGCAAGCAAGGGCTATCCAAGATCATTGAGTTGGTGTTCTCAGCATCATTCTTTTGAGGAAACCAGGAGGCAGTTCCTTCTGTTGACAGATCATGAGATACAGTGTTTTTCTGTCAGCTGTTCTACTGATTTTAGTTTGTCAAAGCTCTGGTCTCATGAAATAATCGGCACTGATGGTGAATCTGGTATTCAGAAAGGTTTGGCTGGTCAGAAGCAAATCTGGCCTCTAGACTTGGAAATTGGCAATAAAGGAAAAGTAATTACTGTTCTTATTGCTACGTTTTGCAAGGACCGGGTAAGCAGTTCGAGCTACATAGAATACTCTCTTCTGACAATGCAGTATAAAGCGGGGGTGAATGTCTCCTCTGACTCGACTGAGCAAACACATGAGAGGGTGTTAGAGAAAAAAGCTCCCATCCAAGTGATAATACCAAAAGCAAGAGTGGAACCCGAGGACTTCTTATTTTCTATGAAATTAAAAGTTGGGGGCAAGCCTTCTGGATCTGCAATTATACTTTCTGGGGATGGAACTGCAACCGTCTCACATTACTGGAGAAATGCTAACCGTCTTTATCAATTTGATCTACCTTATGATGCTGGAAAAGTTCTAGATGCGTCAATATTCCCTTCAGATGATGGAGAAGATGGGGCTTGGGCTGTGCTAACTGAGAAAGCTGGAGTGTGGGCAATTCCCGAGAAGGCTGTTTTACTAGGAGGAGTTGAACCACCGGAGCGAAGCTTGTCTCGTAAAGGTAGTTCTAATGAAGGATCTGTACAAGAAGAAAGAAGAAACTTCTCATTTACAGGGAACATTGCTCCTCGTAGGGCTAGTTCAGAAGCATGGGATGCTGGAGATAGACAAAGGACAGTGTTCACTGGAATTGCACGTCGAACTGCTCGAGATGAAGATTCAGAAGAGTTATTGAACCATCTTTTCCATGACTTTCTTTTATTGGGTCAGGTTAGCAGTGTGCTTGATAAGCTTCGAGATTCAGGGGCATTTGAAAGGGATGGAGAAACAAACGTGTTTTCTAGGATAAGCAAATCAATTGTTGACACTTTAGCTAAACATTGGACAACTACCAGAGGCATTGAGATTGTGGCGTTGTCTGTTGTCTCCTCCCAACTTATCGATAAGCAGCAGAAACATCAAAAATTTCTCCAGTTTCTTGCTCTATCAAAATGCCATGAGGAACTGTGTACAAGACAGACACATGCCTTGCAAATTATCCTGGAACATGGTGAAAAGCTTGCTGGAATGATTAAACTGAGGGAACTGCAAAGCATGATTAGTGAGCACCGTTCTAATCGAATGGTCTCTACTTACTCTAGTTCAGAAGGTGATATTTCCGGTCCTCTTTGGGAGCTGATTCAGTTAGTTGGTGAGAGAGCCCGTCGAAATACTGTTCTTTTGATGGATAGGGATAATGCTGAGGTATTCTACAGTAAGGTTTCAGATATGGAGGAACTATTTTATTGCTTAGACAAACAACTAGAATATGTCATTAGCGAAGCGATGCCATTTGGGGTTCAGCTTCAAAGGGTCTGTGAACTCTCAAACGCATGTGTGACTATAATTCGCACAGCCATGCAGTACAAAAATGAGCATCACATGTGGTACGCATCTCCTGATGGCTTAACACCGTGGTATTGTCAAACTGTTGTAAGAAGTGGGATGTGGAAAGTTGCATGGTTCATGCTTCATTTATTAACTGAAACAAATAACCTTGATAGATCCACAAGATTAGATTTTCATTCGCATCTCGAGTTACTGGCTGAGGTATTACTCGAGGCATATTCTGGTGCTGTCACTGCAAAAGTTGAGCGTGGAGAAGAACAAAAAGGTATTTTAGATGAGTATTGGGCCAGGAGAGATGCACTTCTGAATGCACTTTATCAGCAAGTGTTTAGTTTTATTGAAGCCAGATACCAGGGTTCAAGTGAAGTAACTGAAGAGCAAAATGAAGAGATTTTTAGAAAGCTATCTTCTGATTTGTTGTCTATTGCCAAACGTCATGAAGGTTATCAAACTCTGTGGAATATGTGCTGTGAACTCAATGATTCAGAACTCCTTAAAAGTCTTATGCACGAGAGCATGGGGCCGAAAGGAGGATATAGTAACTTTGTTTTTAAGCAACTGTACAACATCAAACAGTTTTCCAAACTTATGAGGCTTGGAGAAGAGTTTCCGGAAGAGCTACTTACATTTTTAAAGCAGCACCGAGATCTCCTCTGGCTTCATCAAGTGTTCCTTCATCAATTTGCTTCAGCTTCCGAAACTCTTCATTTACTGTCTCTTTCTCAGAACGATAGTTCAATGTCAGCATCTGAAGGGGCTGAATCTTTTGACAACAGTATTGAAGCAACTTTGTCTAACAGAAAGCACCTTTTGCATCTCTCAAAGATAGCTGCTGTGGCAGGAAATAATGCTGATTATGATACAAAGCTGAGGCGCATTGAGGCTGATTTGAAGATTCTGAAATTGCAGGAAGAAATATTGAACCTCCTTCCAGATGAAGAAGAAAAGCAAAATATCGGACAAAGGCTTCTCACTCCGGCCGACCTAATCGAATTGTGCCTCAAAAGTGAAAACAAAGACCTCTCATTACGTGCTTTTGACGTGTTTGCGTGGACCTCCTCTTCATTTCTCAAGTCTAACACAAGCCTTTTGGAGGATTGCTGGAGAAATGCTGCCAATCAGGACCAATGGGATCAAATATATCAATCTTCCATAGCTGAGGGTTGGAGCGACGAGGAAACTCTAGAGATTCTTCGAGACACCGCGCTTTTCCAGGCCTCGAGTAGGTGTTATGGACCTGAAGCAGAAACGTTTGAAGGTGGGTTTGATGAAGTGCTACCGTTGAGACAAGAGAATTCGGAGCTCTCGAAGGAATCAAATTCCACTGTGGAAACGATACTGATGCAGCACAAGAATTTTCCAGATGCGGGCAAGTTGATGCTGACCGCTGTCATGTTGGGAAGTGTGCAGGTTGATGATACCAAAATGGATGAGAGTACTTTCACAATGGATTGA

Network for GWHGAAZE027002

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08801.12	Nucleoporin_N	86	539	7.10E-36

Protein Sequence

>GWHPAAZE027020
MFSPGTKKSNFSARKERTHLHTAPPDSPITPLAENQRSIHDSSIPNRPSTGTPAPWASRLSVLARIPPARKSEKGDEIDPIQPIYVGEFPQVVRDEQTSFLQKRVPGGAWISGGMDSETSLAWMICGNRLFIWSFLSPASSRKCVDLDIPTNVSENGDITRTSGHGNNWLLCVLNWNSTNKGANKIVQQCNSAGIILFNQKTRALIYWPDIYSESGTIPVTNTDDLAVTFSPGDGKTTPNKQWSRGRPTSNSMGSSYFNSLIASVIPDMHNTCIALACTSNGELWKFLCSPTFIQRERIFEDMLCDGGQQLASKGYPRSLSWCSQHHSFEETRRQFLLLTDHEIQCFSVSCSTDFSLSKLWSHEIIGTDGESGIQKGLAGQKQIWPLDLEIGNKGKVITVLIATFCKDRVSSSSYIEYSLLTMQYKAGVNVSSDSTEQTHERVLEKKAPIQVIIPKARVEPEDFLFSMKLKVGGKPSGSAIILSGDGTATVSHYWRNANRLYQFDLPYDAGKVLDASIFPSDDGEDGAWAVLTEKAGVWAIPEKAVLLGGVEPPERSLSRKGSSNEGSVQEERRNFSFTGNIAPRRASSEAWDAGDRQRTVFTGIARRTARDEDSEELLNHLFHDFLLLGQVSSVLDKLRDSGAFERDGETNVFSRISKSIVDTLAKHWTTTRGIEIVALSVVSSQLIDKQQKHQKFLQFLALSKCHEELCTRQTHALQIILEHGEKLAGMIKLRELQSMISEHRSNRMVSTYSSSEGDISGPLWELIQLVGERARRNTVLLMDRDNAEVFYSKVSDMEELFYCLDKQLEYVISEAMPFGVQLQRVCELSNACVTIIRTAMQYKNEHHMWYASPDGLTPWYCQTVVRSGMWKVAWFMLHLLTETNNLDRSTRLDFHSHLELLAEVLLEAYSGAVTAKVERGEEQKGILDEYWARRDALLNALYQQVFSFIEARYQGSSEVTEEQNEEIFRKLSSDLLSIAKRHEGYQTLWNMCCELNDSELLKSLMHESMGPKGGYSNFVFKQLYNIKQFSKLMRLGEEFPEELLTFLKQHRDLLWLHQVFLHQFASASETLHLLSLSQNDSSMSASEGAESFDNSIEATLSNRKHLLHLSKIAAVAGNNADYDTKLRRIEADLKILKLQEEILNLLPDEEEKQNIGQRLLTPADLIELCLKSENKDLSLRAFDVFAWTSSSFLKSNTSLLEDCWRNAANQDQWDQIYQSSIAEGWSDEETLEILRDTALFQASSRCYGPEAETFEGGFDEVLPLRQENSELSKESNSTVETILMQHKNFPDAGKLMLTAVMLGSVQVDDTKMDESTFTMD

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14300	NUP133	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.929
	SRR3591706	second leaf	5.868
	SRR3591707	mature leaf	5.665
	SRR3591708	Shoot apex	15.195
	SRR3591709	Stem	10.307
	SRR3591710	White floral bud	10.658
	SRR3591711	White flower	15.811
	SRR3591712	Green floral bud	14.150
	SRR3591713	Yellow flower	10.366
SRP173429	SRR8316895	Juvenile bud stage	11.618
	SRR8316896	Juvenile bud stage	16.469
	SRR8316897	Juvenile bud stage	6.444
	SRR8316894	Third green stage	6.980
	SRR8316900	Third green stage	14.514
	SRR8316901	Third green stage	12.880
	SRR8316898	Complete white stage	3.376
	SRR8316899	Complete white stage	14.745
	SRR8316903	Complete white stage	6.349
	SRR8316902	Silver flowering stage	3.534
	SRR8316904	Silver flowering stage	5.912
	SRR8316905	Silver flowering stage	2.755
	SRR8316906	Gold flowering stage	8.517
	SRR8316907	Gold flowering stage	9.006
	SRR8316908	Gold flowering stage	10.177
SRP132670	SRR6706286	Control	8.364
	SRR6706287	Light intensity 50%	8.677
	SRR6706288	Light intensity 20%	9.526
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.732
	CNS0095593	Slightly white alabastrum(diploid) 2	7.388
	CNS0095594	Slightly white alabastrum(diploid) 3	7.414
	CNS0095595	Whole white alabastrum(diploid) 2	6.482
	CNS0095596	Whole white alabastrum(diploid) 3	5.681
	CNS0095597	Whole white alabastrum(diploid) 4	4.908
	CNS0095598	Silvery flower (diploied) 1	8.750
	CNS0095599	Silvery flower (diploied) 2	7.892
	CNS0095600	Silvery flower (diploied) 3	13.103
	CNS0095601	Golden flower (diploid) 1	8.683
	CNS0095602	Golden flower (diploid) 2	11.892
	CNS0095603	Golden flower (diploid) 3	11.909
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.597
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.406
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.152
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.769
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.347
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.134
	CNS0095610	Silvery flower (tetraploid) 1	11.691
	CNS0095611	Silvery flower (tetraploid) 2	13.599
	CNS0095612	Silvery flower (tetraploid) 3	6.118
	CNS0095613	Golden flower (tetraploid) 1	3.838
	CNS0095614	Golden flower (tetraploid) 2	9.351
	CNS0095615	Golden flower (tetraploid) 3	6.608
CRA001975	CRR073297	Stem 1	12.624
	CRR073298	Stem 2	10.131
	CRR073299	Stem 3	8.827
	CRR073300	Leaf 1	9.712
	CRR073301	Leaf 2	7.406
	CRR073302	Leaf 3	7.371
	CRR073303	Juvenile bud 1	7.976
	CRR073304	Juvenile bud 2	4.049
	CRR073305	Juvenile bud 3	10.242
	CRR073306	Third green 1	1.629
	CRR073307	Third green 2	1.155
	CRR073308	Third green 3	1.928
	CRR073309	Second white 1	2.459
	CRR073310	Second white 2	1.587
	CRR073311	Second white 3	2.712
	CRR073312	Silver flowering 1	2.359
	CRR073313	Silver flowering 2	3.131
	CRR073314	Silver flowering 3	2.234
	CRR073315	Gold flowering 1	3.192
	CRR073316	Gold flowering 2	5.893
	CRR073317	Gold flowering 3	3.300
	CRR073318	Tawny withering 1	6.692
	CRR073319	Tawny withering 2	5.644
	CRR073320	Tawny withering 3	6.568