Detail information of GWHGAAZE026996


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006363028.12.2077E-113PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like isoform X1 [Solanum tuberosum]
COGYP_003709088.11E-16RNA-binding protein
Swissprottr|Q8W034|RNP1_ARATH2E-69Heterogeneous nuclear ribonucleoprotein 1
trEMBLtr|F6HHL2|F6HHL2_VITVI2E-110Putative uncharacterized protein {ECO:0000313|EMBL:CCB51708.1}
TAIR10AT3G07810.14E-86RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1335122213351901-
GWHAAZE00000008mRNA1335122213351901-
GWHAAZE00000008exon1335168013351901-
GWHAAZE00000008exon1335122213351548-
GWHAAZE00000008CDS1335168013351901-
GWHAAZE00000008CDS1335122213351548-
Transcript Sequence

Network for GWHGAAZE026996

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_18691.50E-16
PF00076.23RRM_11071641.30E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14411MSI mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.798
SRR3591706second leaf8.693
SRR3591707mature leaf14.083
SRR3591708Shoot apex8.884
SRR3591709Stem18.297
SRR3591710White floral bud16.195
SRR3591711White flower20.547
SRR3591712Green floral bud13.558
SRR3591713Yellow flower14.216
SRP173429 SRR8316895Juvenile bud stage 10.533
SRR8316896Juvenile bud stage 17.959
SRR8316897Juvenile bud stage 5.878
SRR8316894Third green stage 7.801
SRR8316900Third green stage 20.939
SRR8316901Third green stage 24.969
SRR8316898Complete white stage 9.289
SRR8316899Complete white stage 27.152
SRR8316903Complete white stage 21.351
SRR8316902Silver flowering stage13.914
SRR8316904Silver flowering stage19.289
SRR8316905Silver flowering stage10.623
SRR8316906Gold flowering stage 22.305
SRR8316907Gold flowering stage 24.538
SRR8316908Gold flowering stage 25.311
SRP132670SRR6706286Control15.237
SRR6706287Light intensity 50%20.276
SRR6706288Light intensity 20%23.153
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.097
CNS0095593Slightly white alabastrum(diploid) 28.152
CNS0095594Slightly white alabastrum(diploid) 35.974
CNS0095595Whole white alabastrum(diploid) 210.815
CNS0095596Whole white alabastrum(diploid) 312.299
CNS0095597Whole white alabastrum(diploid) 49.178
CNS0095598Silvery flower (diploied) 112.026
CNS0095599Silvery flower (diploied) 25.104
CNS0095600Silvery flower (diploied) 322.341
CNS0095601Golden flower (diploid) 16.198
CNS0095602Golden flower (diploid) 212.886
CNS0095603Golden flower (diploid) 313.108
CNS0095604Slightly white alabastrum(tetraploid) 112.724
CNS0095605Slightly white alabastrum(tetraploid) 212.714
CNS0095606Slightly white alabastrum(tetraploid) 311.324
CNS0095607Whole white alabastrum(tetraploid) 112.489
CNS0095608Whole white alabastrum(tetraploid) 210.466
CNS0095609Whole white alabastrum(tetraploid) 317.135
CNS0095610Silvery flower (tetraploid) 120.425
CNS0095611Silvery flower (tetraploid) 214.519
CNS0095612Silvery flower (tetraploid) 318.628
CNS0095613Golden flower (tetraploid) 18.315
CNS0095614Golden flower (tetraploid) 212.604
CNS0095615Golden flower (tetraploid) 311.293
CRA001975CRR073297Stem 116.796
CRR073298Stem 211.732
CRR073299Stem 38.040
CRR073300Leaf 118.870
CRR073301Leaf 214.326
CRR073302Leaf 35.104
CRR073303Juvenile bud 110.262
CRR073304Juvenile bud 28.091
CRR073305Juvenile bud 313.197
CRR073306Third green 16.234
CRR073307Third green 24.444
CRR073308Third green 36.191
CRR073309Second white 13.535
CRR073310Second white 24.925
CRR073311Second white 34.564
CRR073312Silver flowering 12.421
CRR073313Silver flowering 21.353
CRR073314Silver flowering 31.647
CRR073315Gold flowering 15.568
CRR073316Gold flowering 25.958
CRR073317Gold flowering 32.047
CRR073318Tawny withering 15.954
CRR073319Tawny withering 28.220
CRR073320Tawny withering 36.723