Detail information of GWHGAAZE026995


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO58444.16.85512E-81hypothetical protein CISIN_1g012289mg [Citrus sinensis]
trEMBLtr|A0A067ETD9|A0A067ETD9_CITSI3E-81Uncharacterized protein {ECO:0000313|EMBL:KDO58444.1}
TAIR10AT3G07810.10.0000002RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1335035113351034-
GWHAAZE00000008mRNA1335035113351034-
GWHAAZE00000008exon1335035113351034-
GWHAAZE00000008CDS1335035113351034-
Transcript Sequence

Network for GWHGAAZE026995

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14411MSI mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.570
SRR3591706second leaf8.830
SRR3591707mature leaf18.775
SRR3591708Shoot apex11.238
SRR3591709Stem17.946
SRR3591710White floral bud19.124
SRR3591711White flower17.601
SRR3591712Green floral bud19.464
SRR3591713Yellow flower16.989
SRP173429 SRR8316895Juvenile bud stage 11.525
SRR8316896Juvenile bud stage 18.105
SRR8316897Juvenile bud stage 9.205
SRR8316894Third green stage 8.864
SRR8316900Third green stage 23.908
SRR8316901Third green stage 25.727
SRR8316898Complete white stage 15.407
SRR8316899Complete white stage 30.175
SRR8316903Complete white stage 24.700
SRR8316902Silver flowering stage16.213
SRR8316904Silver flowering stage20.295
SRR8316905Silver flowering stage9.776
SRR8316906Gold flowering stage 27.995
SRR8316907Gold flowering stage 26.431
SRR8316908Gold flowering stage 24.350
SRP132670SRR6706286Control28.402
SRR6706287Light intensity 50%29.633
SRR6706288Light intensity 20%31.681
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.662
CNS0095593Slightly white alabastrum(diploid) 224.722
CNS0095594Slightly white alabastrum(diploid) 319.316
CNS0095595Whole white alabastrum(diploid) 219.531
CNS0095596Whole white alabastrum(diploid) 325.729
CNS0095597Whole white alabastrum(diploid) 419.314
CNS0095598Silvery flower (diploied) 115.301
CNS0095599Silvery flower (diploied) 214.603
CNS0095600Silvery flower (diploied) 319.261
CNS0095601Golden flower (diploid) 111.807
CNS0095602Golden flower (diploid) 216.522
CNS0095603Golden flower (diploid) 314.461
CNS0095604Slightly white alabastrum(tetraploid) 126.893
CNS0095605Slightly white alabastrum(tetraploid) 228.178
CNS0095606Slightly white alabastrum(tetraploid) 318.091
CNS0095607Whole white alabastrum(tetraploid) 127.112
CNS0095608Whole white alabastrum(tetraploid) 222.055
CNS0095609Whole white alabastrum(tetraploid) 327.631
CNS0095610Silvery flower (tetraploid) 129.981
CNS0095611Silvery flower (tetraploid) 218.456
CNS0095612Silvery flower (tetraploid) 320.409
CNS0095613Golden flower (tetraploid) 117.202
CNS0095614Golden flower (tetraploid) 219.374
CNS0095615Golden flower (tetraploid) 314.957
CRA001975CRR073297Stem 115.580
CRR073298Stem 214.554
CRR073299Stem 37.096
CRR073300Leaf 121.654
CRR073301Leaf 221.294
CRR073302Leaf 38.940
CRR073303Juvenile bud 112.248
CRR073304Juvenile bud 27.887
CRR073305Juvenile bud 317.629
CRR073306Third green 15.167
CRR073307Third green 24.011
CRR073308Third green 35.185
CRR073309Second white 12.730
CRR073310Second white 21.848
CRR073311Second white 32.518
CRR073312Silver flowering 11.666
CRR073313Silver flowering 22.199
CRR073314Silver flowering 31.094
CRR073315Gold flowering 15.578
CRR073316Gold flowering 27.781
CRR073317Gold flowering 31.624
CRR073318Tawny withering 16.234
CRR073319Tawny withering 28.671
CRR073320Tawny withering 36.650