Gene detail

Detail information of GWHGAAZE026989

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007142519.1	2.91391E-96	hypothetical protein PHAVU_008G287600g [Phaseolus vulgaris]
Swissprot	tr\|Q9SFC6\|GDIR_ARATH	6E-91	Rho GDP-dissociation inhibitor 1
trEMBL	tr\|V7BCB0\|V7BCB0_PHAVU	1E-96	Uncharacterized protein {ECO:0000313\|EMBL:ESW14513.1}
TAIR10	AT3G07880.1	2E-60	Immunoglobulin E-set superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13270331	13273149	-
GWHAAZE00000008	mRNA	13270331	13273149	-
GWHAAZE00000008	exon	13270331	13270476	-
GWHAAZE00000008	exon	13270667	13270885	-
GWHAAZE00000008	exon	13272077	13272143	-
GWHAAZE00000008	exon	13272991	13273149	-
GWHAAZE00000008	CDS	13272991	13273149	-
GWHAAZE00000008	CDS	13272077	13272143	-
GWHAAZE00000008	CDS	13270667	13270885	-
GWHAAZE00000008	CDS	13270331	13270476	-

Transcript Sequence
>GWHTAAZE027023 ATGGGTGAGAAGAGTGGTGATGAGAAAGAAGGGACTATCAGGAGAAGTGCAAGTGATAGTTCTTTGGCTTCTATGTCCGCCGCCGAGGAGGAGGAGGAAGAGTCTAAGATTCAGCTGGGTCCTCAGTGCTCCCTCAAAGAACAGCTTGAGAAGGACAAGGATGATGAGAGCCTAAGGAGGTGGAAGGAACAGCTTCTTGGGAGTGTGGATATTAATAATGTTGGAGAAATGCTAGAACCGGAAGTAAAGATCCTCAGCCTTTCCATCCTCTCTCCCGGTAGACCCGACTTTGTTCTTCCTATTCCTCAAGATGGAAAACCGGAAGGCCTGTGGTTTACTTTGAAAGAAGGTAGTCGTTACAGCTTGAGATTCTCTTTTCAAGTCAGCAATAACATTGTTGTCGGCTTTAAGTACACCAACACTGTCTGGAAAACTGGTGTCAAAGTGGACAGTACAAAGGAGATGCTTGGAACATTTAGTCCTCAGCTAGAGCCTTACACATATGAGATGCCCGAAGAGACCACCCCTTCTGGCTTTTTGGCCAGAGGTTCTTATTCTGCAAGATCCAAGGCAAGTTTAGTCGGATCATAA

Network for GWHGAAZE026989

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02115.18	Rho_GDI	27	190	5.30E-70

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12462	ARHGDI, RHOGDI	Vasopressin-regulated water reabsorption	map04962
K12462	ARHGDI, RHOGDI	Neurotrophin signaling pathway	map04722

Gene Ontology

GO term	Ontology	Name
GO:0005737	cellular_component	cytoplasm
GO:0005094	molecular_function	Rho GDP-dissociation inhibitor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.320
	SRR3591706	second leaf	17.929
	SRR3591707	mature leaf	8.368
	SRR3591708	Shoot apex	17.411
	SRR3591709	Stem	5.890
	SRR3591710	White floral bud	34.779
	SRR3591711	White flower	5.890
	SRR3591712	Green floral bud	124.159
	SRR3591713	Yellow flower	3.747
SRP173429	SRR8316895	Juvenile bud stage	77.638
	SRR8316896	Juvenile bud stage	178.384
	SRR8316897	Juvenile bud stage	81.653
	SRR8316894	Third green stage	57.828
	SRR8316900	Third green stage	159.473
	SRR8316901	Third green stage	182.739
	SRR8316898	Complete white stage	1.755
	SRR8316899	Complete white stage	11.244
	SRR8316903	Complete white stage	2.980
	SRR8316902	Silver flowering stage	1.154
	SRR8316904	Silver flowering stage	1.100
	SRR8316905	Silver flowering stage	0.583
	SRR8316906	Gold flowering stage	2.131
	SRR8316907	Gold flowering stage	1.171
	SRR8316908	Gold flowering stage	1.662
SRP132670	SRR6706286	Control	24.855
	SRR6706287	Light intensity 50%	29.023
	SRR6706288	Light intensity 20%	25.649
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	181.153
	CNS0095593	Slightly white alabastrum(diploid) 2	123.807
	CNS0095594	Slightly white alabastrum(diploid) 3	224.433
	CNS0095595	Whole white alabastrum(diploid) 2	156.176
	CNS0095596	Whole white alabastrum(diploid) 3	224.181
	CNS0095597	Whole white alabastrum(diploid) 4	165.925
	CNS0095598	Silvery flower (diploied) 1	6.831
	CNS0095599	Silvery flower (diploied) 2	5.393
	CNS0095600	Silvery flower (diploied) 3	2.167
	CNS0095601	Golden flower (diploid) 1	4.433
	CNS0095602	Golden flower (diploid) 2	3.668
	CNS0095603	Golden flower (diploid) 3	2.287
	CNS0095604	Slightly white alabastrum(tetraploid) 1	239.364
	CNS0095605	Slightly white alabastrum(tetraploid) 2	226.105
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.753
	CNS0095607	Whole white alabastrum(tetraploid) 1	268.666
	CNS0095608	Whole white alabastrum(tetraploid) 2	252.891
	CNS0095609	Whole white alabastrum(tetraploid) 3	157.626
	CNS0095610	Silvery flower (tetraploid) 1	0.794
	CNS0095611	Silvery flower (tetraploid) 2	2.652
	CNS0095612	Silvery flower (tetraploid) 3	3.775
	CNS0095613	Golden flower (tetraploid) 1	0.878
	CNS0095614	Golden flower (tetraploid) 2	1.261
	CNS0095615	Golden flower (tetraploid) 3	2.481
CRA001975	CRR073297	Stem 1	72.428
	CRR073298	Stem 2	94.791
	CRR073299	Stem 3	55.975
	CRR073300	Leaf 1	116.048
	CRR073301	Leaf 2	97.851
	CRR073302	Leaf 3	83.875
	CRR073303	Juvenile bud 1	54.412
	CRR073304	Juvenile bud 2	46.725
	CRR073305	Juvenile bud 3	10.652
	CRR073306	Third green 1	7.095
	CRR073307	Third green 2	5.850
	CRR073308	Third green 3	6.673
	CRR073309	Second white 1	2.176
	CRR073310	Second white 2	2.142
	CRR073311	Second white 3	2.062
	CRR073312	Silver flowering 1	5.636
	CRR073313	Silver flowering 2	4.744
	CRR073314	Silver flowering 3	0.832
	CRR073315	Gold flowering 1	17.576
	CRR073316	Gold flowering 2	7.076
	CRR073317	Gold flowering 3	7.463
	CRR073318	Tawny withering 1	9.956
	CRR073319	Tawny withering 2	12.923
	CRR073320	Tawny withering 3	9.088