Gene detail

Detail information of GWHGAAZE026986

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN73021.1	9.321E-144	hypothetical protein VITISV_004049 [Vitis vinifera]
Swissprot	tr\|Q9SJ85\|Y2474_ARATH	1E-125	BTB/POZ domain-containing protein At2g04740
trEMBL	tr\|M1A7N7\|M1A7N7_SOLTU	4E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400016451}
TAIR10	AT2G04740.1	1E-103	ankyrin repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13253182	13255150	+
GWHAAZE00000008	mRNA	13253182	13255150	+
GWHAAZE00000008	exon	13253182	13253414	+
GWHAAZE00000008	exon	13253531	13253567	+
GWHAAZE00000008	exon	13253648	13253781	+
GWHAAZE00000008	exon	13254832	13255150	+
GWHAAZE00000008	CDS	13253182	13253414	+
GWHAAZE00000008	CDS	13253531	13253567	+
GWHAAZE00000008	CDS	13253648	13253781	+
GWHAAZE00000008	CDS	13254832	13255150	+

Transcript Sequence
>GWHTAAZE027020 ATGCAGATTAACGATTTCAAGGACGATCTTGCAGATGTTTTTGTTAGAGTAGATAAAAAGCTGTTCCGCTGCCATCAAGTGGTGTTAGCCTCAAGATCGGAATACTTTAAAGCAAGGTTATCCCGAATGAAGGATTTTCTTGAAGGAAAAGATGGTTTGCCCGATTATAGTCTTCTGTGCCTTGAGGAACATGATCTGAGCATGGAAGCTTTTGAGAAAATGATTGAGTATATGTACACTGATGGTTTGAAGGGTATAGACCCAGATCAGGCCGAGGAAATGTTTGACACTGCATCAAGATATTTGTTATTTCCTCTCAAGCGTGCTGTAGCTGATGCACTGCTTACTCACCTGGAAATGGTTTCTCCTGCAGAATTGTGCCATTGGCTAATATTATCAGATATGTATGGTGTTCTGAAGATTAGAGAATATTGTCTAGACGCAATAGCTTGTAACTTTGAGACATTTGCTGATACTCCTGAGTTCCGTGCTATGCTATTGATGCTACCGCCACCATCGGGGGATTCCTCACTTCGAACAACAGCTCCGAGTGCTCCAGGAGCCGAGGTGAACACCAAAGACGGGAATATTCTGGATGATTTGCGAGAGAAATGGCTTGAAGCTGAGGCTGCGGAGCTTGACAAGAGAGATGAGAGCGCACTGCTATTTGACAAACGCCTTGAGATGCTTATGGTTGTGGCAGAACAAGAAAAATCTGGATGA

Network for GWHGAAZE026986

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.32	BTB	8	116	1.10E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.416
	SRR3591706	second leaf	17.261
	SRR3591707	mature leaf	19.474
	SRR3591708	Shoot apex	29.732
	SRR3591709	Stem	27.264
	SRR3591710	White floral bud	34.566
	SRR3591711	White flower	41.923
	SRR3591712	Green floral bud	39.095
	SRR3591713	Yellow flower	37.441
SRP173429	SRR8316895	Juvenile bud stage	30.404
	SRR8316896	Juvenile bud stage	47.920
	SRR8316897	Juvenile bud stage	26.349
	SRR8316894	Third green stage	16.608
	SRR8316900	Third green stage	45.292
	SRR8316901	Third green stage	44.807
	SRR8316898	Complete white stage	13.762
	SRR8316899	Complete white stage	45.742
	SRR8316903	Complete white stage	22.863
	SRR8316902	Silver flowering stage	13.926
	SRR8316904	Silver flowering stage	15.365
	SRR8316905	Silver flowering stage	8.431
	SRR8316906	Gold flowering stage	28.427
	SRR8316907	Gold flowering stage	20.442
	SRR8316908	Gold flowering stage	27.411
SRP132670	SRR6706286	Control	22.952
	SRR6706287	Light intensity 50%	22.738
	SRR6706288	Light intensity 20%	22.950
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.758
	CNS0095593	Slightly white alabastrum(diploid) 2	48.851
	CNS0095594	Slightly white alabastrum(diploid) 3	45.142
	CNS0095595	Whole white alabastrum(diploid) 2	40.094
	CNS0095596	Whole white alabastrum(diploid) 3	40.509
	CNS0095597	Whole white alabastrum(diploid) 4	29.835
	CNS0095598	Silvery flower (diploied) 1	39.654
	CNS0095599	Silvery flower (diploied) 2	39.295
	CNS0095600	Silvery flower (diploied) 3	35.334
	CNS0095601	Golden flower (diploid) 1	30.157
	CNS0095602	Golden flower (diploid) 2	31.712
	CNS0095603	Golden flower (diploid) 3	32.514
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.116
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.455
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.668
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.745
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.804
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.996
	CNS0095610	Silvery flower (tetraploid) 1	31.540
	CNS0095611	Silvery flower (tetraploid) 2	36.181
	CNS0095612	Silvery flower (tetraploid) 3	36.065
	CNS0095613	Golden flower (tetraploid) 1	26.566
	CNS0095614	Golden flower (tetraploid) 2	32.448
	CNS0095615	Golden flower (tetraploid) 3	26.295
CRA001975	CRR073297	Stem 1	34.837
	CRR073298	Stem 2	29.022
	CRR073299	Stem 3	27.592
	CRR073300	Leaf 1	35.671
	CRR073301	Leaf 2	42.106
	CRR073302	Leaf 3	28.943
	CRR073303	Juvenile bud 1	34.853
	CRR073304	Juvenile bud 2	20.760
	CRR073305	Juvenile bud 3	30.844
	CRR073306	Third green 1	15.633
	CRR073307	Third green 2	15.233
	CRR073308	Third green 3	15.600
	CRR073309	Second white 1	18.761
	CRR073310	Second white 2	17.519
	CRR073311	Second white 3	11.779
	CRR073312	Silver flowering 1	13.358
	CRR073313	Silver flowering 2	12.076
	CRR073314	Silver flowering 3	10.896
	CRR073315	Gold flowering 1	17.063
	CRR073316	Gold flowering 2	18.662
	CRR073317	Gold flowering 3	14.496
	CRR073318	Tawny withering 1	29.128
	CRR073319	Tawny withering 2	32.296
	CRR073320	Tawny withering 3	21.662