Gene detail

Detail information of GWHGAAZE026977

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011085485.1	0	PREDICTED: protein disulfide isomerase-like 2-3 [Sesamum indicum]
COG	YP_005271147.1	2E-14	thioredoxin TrxA1
Swissprot	tr\|Q67UF5\|PDI23_ORYSJ	0	Protein disulfide isomerase-like 2-3 (Precursor)
trEMBL	tr\|V7BB47\|V7BB47_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW13661.1}
TAIR10	AT1G04980.1	8E-148	PDI-like 2-2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13076757	13080805	+
GWHAAZE00000008	mRNA	13076757	13080805	+
GWHAAZE00000008	exon	13076757	13076915	+
GWHAAZE00000008	exon	13077370	13077516	+
GWHAAZE00000008	exon	13077739	13077770	+
GWHAAZE00000008	exon	13078154	13078330	+
GWHAAZE00000008	exon	13078523	13078696	+
GWHAAZE00000008	exon	13079317	13079443	+
GWHAAZE00000008	exon	13079834	13079925	+
GWHAAZE00000008	exon	13080272	13080451	+
GWHAAZE00000008	exon	13080631	13080805	+
GWHAAZE00000008	CDS	13076757	13076915	+
GWHAAZE00000008	CDS	13077370	13077516	+
GWHAAZE00000008	CDS	13077739	13077770	+
GWHAAZE00000008	CDS	13078154	13078330	+
GWHAAZE00000008	CDS	13078523	13078696	+
GWHAAZE00000008	CDS	13079317	13079443	+
GWHAAZE00000008	CDS	13079834	13079925	+
GWHAAZE00000008	CDS	13080272	13080451	+
GWHAAZE00000008	CDS	13080631	13080805	+

Transcript Sequence
>GWHTAAZE027011 GTCCTAAATTCAAAAGGAGTTGTTTTGGTTGAGTTCTTTGCACCTTGGTGTGGTCATTGTAGAGCTCTAACACCCACATGGGAGACAGCAGCTACTGTCTTGAAAGGTGTTGCCACTGTGGCAGCACTTGATTGTGATGCCCACAAGTCCCTTGCTCAGGAATATGGGATTAAAGGATTTCCAACAATCAAGGTGTTTGTGCCTGGTAAACCTCCTGTAGATTATCAAGGAGCTAGGGAGGTCAAACCAATTGCAGAATTTGCAGTCCAACAGGTGTTGATTATTAATTTCAAACTTGCACATCCAGACCTGAAAACTGGCTACATGATCCAGTTAAGACTTTTCTGTTCTGTACAGATCAGGGCACTTTTGAAGGAACGGTTAAGCGGAAAAGCAACAGGAGGTTCAAGTGAGAAATCAGAACCCAGTGCATCAGTTGAATTAAATTCTCGTAATTTTGATGAATTGGTGCTTAAGAGTAAAGAACTATGGATTGTGGAGTTCTTTGCACCTTGGTGTGGACATTGTAAGAAGCTTGCTCCTGAGTGGAAGAAGGCTGCGCATAACTTGAAGGGCAAGGTGAAGCTGGGTCATGTAGACTGTGATGCAGAGAAGGTAGTTTTTGGTTCTTACATTTTTCCTGTGTTTTTAATATTTTTAATATGTTGTGCACTTTATATTAGCTATCCGTTCAAAGTGCAAGGCTTCCCCACTATCATGGTCTTCGGGGCAGACAAAAGCAGCCCATTCCCATTCGAAGGTGCAAGATCCGCCTTGGCAATTGAGTCATTTGCCCTAGAGCAGCTTGAAACAAATGATGTGATGGATGAGAAGTGCGGCTCAGCAGCCATCTGCTTTGTTGCCTTCCTCCCGGACATTTTGGATTCCAAGGCGGAGGGGAGGAACAAATTGGTAATCAAAATGTTTGATTTTTTTTGCAGCTATGTTTGGGTGGCTGCAGGTAAGCAGCTAGAACTAGAAAAGATGGTAGGTGTTGGTGGTTACGGCTACCCGGCCTTGGTGGCTCTCAATGTAAAGAAAGGAGCATATGCTCCACTTCGTAGTGCATTTGAGCACGACCAGATTATAGAGTTTGTGAAAGAAGCTGGACAGGGGGGGAAGGGTAATTTACAGCTACACGGCACCCCCGTGATTGTGAAGACTGAGCCGTGGGACGGTAAAGATGGACAGATTATTGAAGAAGACGAGTTTTCACTAGAAGAACTTATGGGAGAAGAATCTTCAAGCAAGGATGAGTTATAA

Network for GWHGAAZE026977

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00085.21	Thioredoxin	2	87	1.50E-25
PF00085.21	Thioredoxin	146	210	8.20E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09584	PDIA6, TXNDC7	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0045454	biological_process	cell redox homeostasis

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.892
	SRR3591706	second leaf	25.118
	SRR3591707	mature leaf	17.607
	SRR3591708	Shoot apex	34.527
	SRR3591709	Stem	34.340
	SRR3591710	White floral bud	56.698
	SRR3591711	White flower	57.555
	SRR3591712	Green floral bud	50.849
	SRR3591713	Yellow flower	80.571
SRP173429	SRR8316895	Juvenile bud stage	36.087
	SRR8316896	Juvenile bud stage	44.551
	SRR8316897	Juvenile bud stage	23.098
	SRR8316894	Third green stage	18.221
	SRR8316900	Third green stage	59.530
	SRR8316901	Third green stage	54.521
	SRR8316898	Complete white stage	27.822
	SRR8316899	Complete white stage	53.065
	SRR8316903	Complete white stage	42.523
	SRR8316902	Silver flowering stage	23.577
	SRR8316904	Silver flowering stage	32.734
	SRR8316905	Silver flowering stage	19.393
	SRR8316906	Gold flowering stage	57.470
	SRR8316907	Gold flowering stage	53.239
	SRR8316908	Gold flowering stage	42.921
SRP132670	SRR6706286	Control	64.657
	SRR6706287	Light intensity 50%	63.687
	SRR6706288	Light intensity 20%	65.838
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	56.719
	CNS0095593	Slightly white alabastrum(diploid) 2	65.351
	CNS0095594	Slightly white alabastrum(diploid) 3	64.047
	CNS0095595	Whole white alabastrum(diploid) 2	62.156
	CNS0095596	Whole white alabastrum(diploid) 3	64.545
	CNS0095597	Whole white alabastrum(diploid) 4	48.630
	CNS0095598	Silvery flower (diploied) 1	50.938
	CNS0095599	Silvery flower (diploied) 2	40.640
	CNS0095600	Silvery flower (diploied) 3	65.541
	CNS0095601	Golden flower (diploid) 1	34.988
	CNS0095602	Golden flower (diploid) 2	80.354
	CNS0095603	Golden flower (diploid) 3	77.994
	CNS0095604	Slightly white alabastrum(tetraploid) 1	62.294
	CNS0095605	Slightly white alabastrum(tetraploid) 2	58.453
	CNS0095606	Slightly white alabastrum(tetraploid) 3	65.617
	CNS0095607	Whole white alabastrum(tetraploid) 1	47.294
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.897
	CNS0095609	Whole white alabastrum(tetraploid) 3	68.866
	CNS0095610	Silvery flower (tetraploid) 1	84.424
	CNS0095611	Silvery flower (tetraploid) 2	61.676
	CNS0095612	Silvery flower (tetraploid) 3	56.749
	CNS0095613	Golden flower (tetraploid) 1	50.195
	CNS0095614	Golden flower (tetraploid) 2	69.024
	CNS0095615	Golden flower (tetraploid) 3	50.018
CRA001975	CRR073297	Stem 1	66.054
	CRR073298	Stem 2	54.058
	CRR073299	Stem 3	80.214
	CRR073300	Leaf 1	55.450
	CRR073301	Leaf 2	57.654
	CRR073302	Leaf 3	65.649
	CRR073303	Juvenile bud 1	63.230
	CRR073304	Juvenile bud 2	60.973
	CRR073305	Juvenile bud 3	54.281
	CRR073306	Third green 1	23.066
	CRR073307	Third green 2	28.079
	CRR073308	Third green 3	30.853
	CRR073309	Second white 1	32.677
	CRR073310	Second white 2	33.566
	CRR073311	Second white 3	27.348
	CRR073312	Silver flowering 1	47.090
	CRR073313	Silver flowering 2	49.839
	CRR073314	Silver flowering 3	64.955
	CRR073315	Gold flowering 1	18.086
	CRR073316	Gold flowering 2	21.012
	CRR073317	Gold flowering 3	13.448
	CRR073318	Tawny withering 1	44.150
	CRR073319	Tawny withering 2	36.726
	CRR073320	Tawny withering 3	46.388