Gene detail

Detail information of GWHGAAZE026975

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275775.1	1.9403E-180	PREDICTED: zinc finger CCCH domain-containing protein 3 [Vitis vinifera]
Swissprot	tr\|Q94AD9\|C3H3_ARATH	2E-101	Zinc finger CCCH domain-containing protein 3
trEMBL	tr\|D7TEE8\|D7TEE8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28871.3}
TAIR10	AT1G04990.2	2E-76	Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13041991	13048766	+
GWHAAZE00000008	mRNA	13041991	13048766	+
GWHAAZE00000008	exon	13041991	13042034	+
GWHAAZE00000008	exon	13042444	13042625	+
GWHAAZE00000008	exon	13042793	13042846	+
GWHAAZE00000008	exon	13043597	13043713	+
GWHAAZE00000008	exon	13043850	13044161	+
GWHAAZE00000008	exon	13047539	13047787	+
GWHAAZE00000008	exon	13048110	13048766	+
GWHAAZE00000008	five_prime_UTR	13041991	13042034	+
GWHAAZE00000008	five_prime_UTR	13042444	13042568	+
GWHAAZE00000008	CDS	13042569	13042625	+
GWHAAZE00000008	CDS	13042793	13042846	+
GWHAAZE00000008	CDS	13043597	13043713	+
GWHAAZE00000008	CDS	13043850	13044161	+
GWHAAZE00000008	CDS	13047539	13047787	+
GWHAAZE00000008	CDS	13048110	13048472	+
GWHAAZE00000008	three_prime_UTR	13048473	13048766	+

Transcript Sequence
>GWHTAAZE027009 TGGTATCTCCGGTATTTCTAATCCCACCGTGGATAACATTGAAGAAGCTATAAGGAGATTGAGAATTCAGAGCAATGATAAACAGGATGGGGGTGGTGCACTAGGTCAATATAGCCCCTATCCAGACCGTCCTGGTGAACCCGATTGCATATATTATTTGAGGACTGGCATGTGTGGTTATGGAAGTAACTGTCGATTCAATCATCCTTCTTATTTTGGACAACAGGTTGGTCAGTTTGGAGGTGAATTCCCAGAAAGAATTGGACAACCAGACTGTGGGTATTTTCTGAAGACAGGTACTTGCAAATATGGATCAACATGTAAATATCACCATCCACGGGACAGGCATGGTGCTGGACCAGTCTTGTTGAACATTTTGGGGCTACCTATACGTCAGGATGAAAAGTCATGTTCTTATTACATGAGAACAGGAACATGTAAATATGGTGTTGCGTGCAAGTTTGATCACCCTCAGCCTTCATCAACTGGAACTGTTTTACCAGTTCCCGGACCTGCTGCTTATGGATCGACTGGCTTAGCAATTGTGCCCTCATCTGATCTAGCCTACACAGGGGGACTTCCTGCATGGTCCTTAGCAAGAGCAACATACTTTTCTGGTCCTCGCTCACAAGGAACCCAGACATACATGCCACTGGTCTTTTCTCCCTCGCAAGGCATTGCACCAGCACAAGGCTGGAACACATATGTGGGAAGCATGAGCCCCGCCGCCTCGACCAATCTACTTGGTGAATCTGGAGGTATTAATGGACAGGTTCATTCATTGTCTCAATCAGTTTCTAATAATCTACCTGAGAGGCCTGATCAACCAGAATGCCGCTACTTCATGAACACTGGAAGCTGCAAGTATGGATCAGATTGCAAGTACCATCACCCACGAGAAAAGACTGCTCAATTTGCAGCTAGTGCCTTGGGTCCGCTTGGCCTTCCCTTGAGACCTGGGCAAGCTGTATGTTCATACTACAATATGTACGGGCTCTGCAAATACGGTCCAACTTGCAAATTTGACCACCCAGTTCTCGGATACTCATATAACTACAGTGTGAGCCTGCCTGCATTATCTGTTCTCGATCCCCCCACCTTCCCTTACCATCAGAAAAGCTCACCAACTGCCCATTTTTCGGAGATTTCTCCCTCTAAATCATCTAAATTTACTGAATGGAACAACCGCAAACGTGGTGGAGCCGCCAGCAAGAAAAACCCAAAGATTGAAGCTAAAACGCCCGAAGATTCACCAGAACAGGCCAGTTCTCCCAAGGATTCGCTGGCTGCTTCGGAACATCTCAACGATCAGTCTGAGTGAACTATAATTATTTTTTGACTTTTTTGAATCTTTTTGCTTTTTTGTTACTGTGTTGATATGGAACGGAGTTTTTATGACTTTGAGCCTCCTGTCCCCAATTCAGCAGTGGATAGTTTGAGGTGGAATTGGTTGCTTGGAGATTAATGTTGAGAGAGAGAGGAGAGGGAGAGAGCTTGGGGGTTGTGGAAGGCCGCCTTTTTGTGGTGAATAAAATGCAGGTGAAGCTTCTTTTTTTACATTTAATTTTTGTCCAGACTTTTGTAGAACCAATTAAGCACCAACTCGTTATGGAAA

Network for GWHGAAZE026975

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	33	57	2.10E-09
PF00642.25	zf-CCCH	78	102	1.30E-10
PF00642.25	zf-CCCH	218	243	8.20E-10
PF00642.25	zf-CCCH	264	288	2.50E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.315
	SRR3591706	second leaf	24.283
	SRR3591707	mature leaf	16.006
	SRR3591708	Shoot apex	36.929
	SRR3591709	Stem	60.941
	SRR3591710	White floral bud	33.761
	SRR3591711	White flower	40.662
	SRR3591712	Green floral bud	54.525
	SRR3591713	Yellow flower	30.573
SRP173429	SRR8316895	Juvenile bud stage	34.236
	SRR8316896	Juvenile bud stage	50.931
	SRR8316897	Juvenile bud stage	22.315
	SRR8316894	Third green stage	22.616
	SRR8316900	Third green stage	71.628
	SRR8316901	Third green stage	71.536
	SRR8316898	Complete white stage	17.367
	SRR8316899	Complete white stage	61.426
	SRR8316903	Complete white stage	26.300
	SRR8316902	Silver flowering stage	13.902
	SRR8316904	Silver flowering stage	17.707
	SRR8316905	Silver flowering stage	8.753
	SRR8316906	Gold flowering stage	22.756
	SRR8316907	Gold flowering stage	28.124
	SRR8316908	Gold flowering stage	28.120
SRP132670	SRR6706286	Control	54.980
	SRR6706287	Light intensity 50%	51.163
	SRR6706288	Light intensity 20%	53.276
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	50.620
	CNS0095593	Slightly white alabastrum(diploid) 2	46.036
	CNS0095594	Slightly white alabastrum(diploid) 3	49.494
	CNS0095595	Whole white alabastrum(diploid) 2	40.615
	CNS0095596	Whole white alabastrum(diploid) 3	45.525
	CNS0095597	Whole white alabastrum(diploid) 4	39.977
	CNS0095598	Silvery flower (diploied) 1	31.457
	CNS0095599	Silvery flower (diploied) 2	29.452
	CNS0095600	Silvery flower (diploied) 3	29.501
	CNS0095601	Golden flower (diploid) 1	21.853
	CNS0095602	Golden flower (diploid) 2	25.879
	CNS0095603	Golden flower (diploid) 3	23.568
	CNS0095604	Slightly white alabastrum(tetraploid) 1	51.939
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.281
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.489
	CNS0095607	Whole white alabastrum(tetraploid) 1	54.384
	CNS0095608	Whole white alabastrum(tetraploid) 2	43.434
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.913
	CNS0095610	Silvery flower (tetraploid) 1	23.594
	CNS0095611	Silvery flower (tetraploid) 2	20.894
	CNS0095612	Silvery flower (tetraploid) 3	14.532
	CNS0095613	Golden flower (tetraploid) 1	11.703
	CNS0095614	Golden flower (tetraploid) 2	16.476
	CNS0095615	Golden flower (tetraploid) 3	7.252
CRA001975	CRR073297	Stem 1	57.006
	CRR073298	Stem 2	50.432
	CRR073299	Stem 3	43.379
	CRR073300	Leaf 1	65.135
	CRR073301	Leaf 2	75.604
	CRR073302	Leaf 3	49.697
	CRR073303	Juvenile bud 1	49.865
	CRR073304	Juvenile bud 2	34.070
	CRR073305	Juvenile bud 3	52.265
	CRR073306	Third green 1	14.644
	CRR073307	Third green 2	15.991
	CRR073308	Third green 3	17.916
	CRR073309	Second white 1	12.571
	CRR073310	Second white 2	10.079
	CRR073311	Second white 3	8.612
	CRR073312	Silver flowering 1	8.310
	CRR073313	Silver flowering 2	6.478
	CRR073314	Silver flowering 3	8.499
	CRR073315	Gold flowering 1	11.862
	CRR073316	Gold flowering 2	15.072
	CRR073317	Gold flowering 3	8.206
	CRR073318	Tawny withering 1	40.308
	CRR073319	Tawny withering 2	45.687
	CRR073320	Tawny withering 3	41.357