Gene detail

Detail information of GWHGAAZE026967

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009788329.1	1.2724E-145	PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Nicotiana sylvestris]
Swissprot	tr\|Q7Y175\|UBAX1_ARATH	3E-114	UBA and UBX domain-containing protein At4g15410
trEMBL	tr\|K4CF29\|K4CF29_SOLLC	1E-144	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc07g049260.2.1}
TAIR10	AT4G22150.1	3E-82	plant UBX domain-containing protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	12913552	12917454	-
GWHAAZE00000008	mRNA	12913552	12917454	-
GWHAAZE00000008	exon	12913552	12913923	-
GWHAAZE00000008	exon	12914025	12914120	-
GWHAAZE00000008	exon	12914773	12915202	-
GWHAAZE00000008	exon	12916988	12917454	-
GWHAAZE00000008	CDS	12916988	12917454	-
GWHAAZE00000008	CDS	12914773	12915202	-
GWHAAZE00000008	CDS	12914025	12914120	-
GWHAAZE00000008	CDS	12913552	12913923	-

Transcript Sequence
>GWHTAAZE027001 ATGGAAAACCAAGCAACAGCACAACCCGAAGAAGAAGAAAAGAATCCCAACATTCACACCGATCTGATTAACACATTCTCCGATATCACCTCTTCTTCCAAAGAAGAAGCCCTTTTCTTCTTAGAATCACACAATTTCGACCTAGATTCCGCCGTCTCCACTTTCTTCGAAACCAATTCCACCCTCCCCTCCGATGCCGATCCACCCGCTCCGGCCACCCTCTCTCCGATCACTTCTCCGTCTAGGTCTCGCTCCCGCTCCCCGTCGCCTTCCCCTCCGATTGTCTTCCAGCCCAACCCTTATAATCTACGGTCCAGGCAGGGTCCTGCTAATCCCACTGACAAGAAGCCCTCCGGTAGTCGGCCCCGTGGGATAAGGACTCTCTCGGATCTGAATCGCAGGGCTAGGGATGATTCTGGTAGTGATTCCGATGAGCCTCAGGAGTACTACACTGGTGGCGAGAAGAGCGGAATGCTTGTCCAAGATCCAACAAAAGTCAATGATGTAGATTCTCTCTTCAATCAAGCTAGACAGGCGGGAGCTGTAGAAGGACCTGCTGACCACCTCCTTCCATCATCATCGAGCTCGAGAAGTTTTAGAGGAACCGGAAGACTACTTTCTGGAGAGGCATTGTCCTCGGCTCCTCAACAACCACCTGAAGTTGTTACTCACAATATCACTTTCTGGAGCAATGGATTCACTGTAGATGATGGTCCTTTGCGAAGGCTCGATGATCCTGAAAATGCTTCCTTCTTGGAGGTAGTATTACCTGGTTTCTGTGTTGGCATCGTTTTAGGACATATGCTTAATGGCAATGCAGGCCCTACGTGTGTCCTTTTGGTTCTCCATATTGTGAAGACACTTGGGGGCCCACATTCACTTATTGCGTCCTCTGTGAGTATCAGGAAGTCGGAGTGCCCAAAAGAATTTGAGCCGGCAGACGGGAAGACCTCAATCCACGTTAGTCTCACAAGGAGAGAGGAAAACTGCCCTGTTCCACAAGAGTGCCAAATTTCATTTCAAGGTGCGGGAAGAGCCATTGGTGGTCCCACCTCCACTGCACCAGCAGAGCCTGCTGTGGCTGCACTCAACACTGCACCGCCTCCATCCATGGGTCTAGTTGTGGATCAGGCGCTACCTTCTACCTCTATTCGGCTCAAATTGGCTGATGGAACCTGCATGGTTTCCCGATTCAACAACCACCACACGATCAGAGAGATACGCGGATTCATTGATGCGTCGAGGCCAGGTGGGCCCAGGACTTACCAACTGCAAATGGTGTATCCTCCCAAAGAGCTCAGTGATCTGGACCAAACGATAGAGCAGGCCGGGCTAGCCAAGTCAGTTGTGATCCAGAAACTTTAG

Network for GWHGAAZE026967

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14555.7	UBA_4	21	59	1.20E-12
PF08059.14	SEP	226	259	8.10E-12
PF00789.21	UBX	380	452	1.50E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14012	SHP1, UBX1, NSFL1C	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.867
	SRR3591706	second leaf	32.919
	SRR3591707	mature leaf	26.740
	SRR3591708	Shoot apex	36.884
	SRR3591709	Stem	48.643
	SRR3591710	White floral bud	57.244
	SRR3591711	White flower	87.909
	SRR3591712	Green floral bud	61.047
	SRR3591713	Yellow flower	80.629
SRP173429	SRR8316895	Juvenile bud stage	31.471
	SRR8316896	Juvenile bud stage	44.437
	SRR8316897	Juvenile bud stage	22.880
	SRR8316894	Third green stage	22.379
	SRR8316900	Third green stage	52.835
	SRR8316901	Third green stage	54.079
	SRR8316898	Complete white stage	23.849
	SRR8316899	Complete white stage	71.240
	SRR8316903	Complete white stage	54.302
	SRR8316902	Silver flowering stage	35.873
	SRR8316904	Silver flowering stage	40.966
	SRR8316905	Silver flowering stage	24.952
	SRR8316906	Gold flowering stage	62.860
	SRR8316907	Gold flowering stage	73.296
	SRR8316908	Gold flowering stage	84.122
SRP132670	SRR6706286	Control	71.434
	SRR6706287	Light intensity 50%	73.544
	SRR6706288	Light intensity 20%	75.149
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.465
	CNS0095593	Slightly white alabastrum(diploid) 2	49.471
	CNS0095594	Slightly white alabastrum(diploid) 3	44.836
	CNS0095595	Whole white alabastrum(diploid) 2	38.996
	CNS0095596	Whole white alabastrum(diploid) 3	34.884
	CNS0095597	Whole white alabastrum(diploid) 4	38.760
	CNS0095598	Silvery flower (diploied) 1	35.587
	CNS0095599	Silvery flower (diploied) 2	33.846
	CNS0095600	Silvery flower (diploied) 3	64.903
	CNS0095601	Golden flower (diploid) 1	36.888
	CNS0095602	Golden flower (diploid) 2	60.395
	CNS0095603	Golden flower (diploid) 3	58.545
	CNS0095604	Slightly white alabastrum(tetraploid) 1	57.806
	CNS0095605	Slightly white alabastrum(tetraploid) 2	47.394
	CNS0095606	Slightly white alabastrum(tetraploid) 3	73.977
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.831
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.866
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.374
	CNS0095610	Silvery flower (tetraploid) 1	76.483
	CNS0095611	Silvery flower (tetraploid) 2	78.601
	CNS0095612	Silvery flower (tetraploid) 3	75.428
	CNS0095613	Golden flower (tetraploid) 1	67.255
	CNS0095614	Golden flower (tetraploid) 2	91.427
	CNS0095615	Golden flower (tetraploid) 3	99.346
CRA001975	CRR073297	Stem 1	52.646
	CRR073298	Stem 2	52.587
	CRR073299	Stem 3	52.511
	CRR073300	Leaf 1	62.995
	CRR073301	Leaf 2	71.672
	CRR073302	Leaf 3	61.225
	CRR073303	Juvenile bud 1	69.496
	CRR073304	Juvenile bud 2	65.002
	CRR073305	Juvenile bud 3	101.644
	CRR073306	Third green 1	40.772
	CRR073307	Third green 2	40.331
	CRR073308	Third green 3	41.243
	CRR073309	Second white 1	36.022
	CRR073310	Second white 2	32.657
	CRR073311	Second white 3	25.170
	CRR073312	Silver flowering 1	28.614
	CRR073313	Silver flowering 2	31.677
	CRR073314	Silver flowering 3	30.022
	CRR073315	Gold flowering 1	28.824
	CRR073316	Gold flowering 2	35.099
	CRR073317	Gold flowering 3	28.090
	CRR073318	Tawny withering 1	66.710
	CRR073319	Tawny withering 2	59.572
	CRR073320	Tawny withering 3	61.411