Gene detail

Detail information of GWHGAAZE026962

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU43124.1	0	hypothetical protein MIMGU_mgv1a020205mg [Erythranthe guttata]
COG	NP_864467.1	2E-25	serine/threonine-protein kinase pknA
Swissprot	tr\|A8R7E6\|CERK1_ARATH	0	Chitin elicitor receptor kinase 1 (Precursor)
trEMBL	tr\|A0A022RSS7\|A0A022RSS7_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU43124.1}
TAIR10	AT3G21630.1	1E-169	chitin elicitor receptor kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	12831228	12838159	-
GWHAAZE00000008	mRNA	12831228	12838159	-
GWHAAZE00000008	exon	12831228	12831392	-
GWHAAZE00000008	exon	12831802	12831900	-
GWHAAZE00000008	exon	12832571	12832709	-
GWHAAZE00000008	exon	12833716	12833807	-
GWHAAZE00000008	exon	12833895	12834046	-
GWHAAZE00000008	exon	12834139	12834232	-
GWHAAZE00000008	exon	12835211	12835300	-
GWHAAZE00000008	exon	12835407	12835603	-
GWHAAZE00000008	exon	12837550	12838159	-
GWHAAZE00000008	CDS	12837550	12838159	-
GWHAAZE00000008	CDS	12835407	12835603	-
GWHAAZE00000008	CDS	12835211	12835300	-
GWHAAZE00000008	CDS	12834139	12834232	-
GWHAAZE00000008	CDS	12833895	12834046	-
GWHAAZE00000008	CDS	12833716	12833807	-
GWHAAZE00000008	CDS	12832571	12832709	-
GWHAAZE00000008	CDS	12831802	12831900	-
GWHAAZE00000008	CDS	12831228	12831392	-

Transcript Sequence
>GWHTAAZE026996 ATGTTGCTGCCGTTCAAATTAGGGTTTTTGCTACTGATTTCAATCTCTTCAGCGGAATCCAGATGTTCAAGAGGCTGTGATTTAGCTCTCGGTTCGTACTACGTTTGGCCGGAATCGAATCTCACTTTCATCTCTGAAATCACGGGCGCTCCAATTGACGTTATTCTCAATTACAATCCACAAATACCTAACCAAGACAGTGTTCAATCGGATTCCAGGATCCGCATACCTTTCACTTGTGACTGCATCAATCGCGAGTTTTTAGGACACGTGTTTACCTACAATGTTCGGTCCGGTGACACGTACGATAAGGTCGCAAACTTGTACTACGCGAATTTGACGACGGTGCCATGGCTGGAGAGGTTTAATTTTTACTCCCCAAATCGGATACCGGATACGAATGCGAGGCTGAATGTGACTGTGAATTGTTCCTGTGGGGATAGTCGGGTTTCTAAGGATTATGGGTTGTTTGTTACCTACCCGCTCCGCCCCGGAGAGAGCTTGGATTCTGTTGCTTCTCAGTCGAATTTGACTGCCGATTTGATAAGGAATTACAATTTGGGGGCTAATTTTAGTGCAGGCAGTGGATTGGTTTATATTCCCGGTCGAGCTTCTGGAGGTACCCCGTTTAAAGGTGCTGACCCCACTGGCCCTGGGGCTTCTCCACGCCTTACTGGCATAACTGTTGACAAATCTGTGGAGTTCTCTTATGAAGAGCTTTCAAAGGCTACTGATGACTTCAGCCTCTCTTATAAGATTGGTCAAGGTGGATTTGGTGCTGTTTACTATGCTGAACTCAGAGGCGAGAAAGCTGCAATTAAGAAGATGGATATGCAAGCGTCAAGAGAATTTCTCGCTGAATTAAAGGTTTTAACGCATGTTCATCACCTGAACCTGGTACGTCTGATAGGGTACTGTGTCGAGGGTTCTCTTTTCCTAGTCTATGAATTCATCGAGAATGGCAATTTAAGCCAACACTTGCGAGGCTCAGAGAGGGATCCCCTTCCATGGGCTACAAGAGTGCAAATTGCTCTAGATTCAGCAAGAGGTCTTGAGTATATCCATGAACATACGGTTCCTGTCTATATTCATCGGGATATTAAATCTGCAAATATTCTGATTGACAAAAACTTCCACGCGAAGGTTGCAGATTTCGGTTTGACAAAACTGACCGAAGTTGGTAGTACATCAATGCCCACACGTCTTGTGGGTACATTTGGATACATGCCACCTGAATATGCACAGTATGGTGATGTTTCTCCTAAAATAGACGTCTATGCTTTTGGGGTTGTGATTTATGAGCTTATTTCAGCCAAAGAAGCCATTGTCAAGGAAAATGGTTCTGTTTCTGAATCAAAGGGCCTTGTTGCCTTATTTGATGAAGTCCTTGGTAAACCAGATCCAAAAGAAGACCTTGGCAAGCTAGTTGACCCTAGGCTTGGAGAGAACTACCCTCTCGACTCAGTCCGTAAGATGGCTCAGCTAGCCAAAGCTTGCACGCATGAAAAACCTGAACTGCGGCCAAGCATGAGATCCATTGTGGTCGCGTTAATGACCCTCTCGTCCTCAACTGAGGATTGGGATATCGGCTCCTTCTATGAAAACCAAGCTCTAGTCAACCTGATGTCTGGAAGGTAG

Network for GWHGAAZE026962

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	249	516	2.40E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LysM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.397
	SRR3591706	second leaf	21.638
	SRR3591707	mature leaf	21.411
	SRR3591708	Shoot apex	22.106
	SRR3591709	Stem	33.708
	SRR3591710	White floral bud	34.954
	SRR3591711	White flower	43.931
	SRR3591712	Green floral bud	29.625
	SRR3591713	Yellow flower	46.975
SRP173429	SRR8316895	Juvenile bud stage	17.155
	SRR8316896	Juvenile bud stage	23.852
	SRR8316897	Juvenile bud stage	14.102
	SRR8316894	Third green stage	9.372
	SRR8316900	Third green stage	28.520
	SRR8316901	Third green stage	25.988
	SRR8316898	Complete white stage	17.926
	SRR8316899	Complete white stage	43.530
	SRR8316903	Complete white stage	26.845
	SRR8316902	Silver flowering stage	18.477
	SRR8316904	Silver flowering stage	27.363
	SRR8316905	Silver flowering stage	14.858
	SRR8316906	Gold flowering stage	44.265
	SRR8316907	Gold flowering stage	41.624
	SRR8316908	Gold flowering stage	53.817
SRP132670	SRR6706286	Control	28.656
	SRR6706287	Light intensity 50%	28.628
	SRR6706288	Light intensity 20%	31.552
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.380
	CNS0095593	Slightly white alabastrum(diploid) 2	20.922
	CNS0095594	Slightly white alabastrum(diploid) 3	17.111
	CNS0095595	Whole white alabastrum(diploid) 2	17.092
	CNS0095596	Whole white alabastrum(diploid) 3	15.993
	CNS0095597	Whole white alabastrum(diploid) 4	17.872
	CNS0095598	Silvery flower (diploied) 1	25.065
	CNS0095599	Silvery flower (diploied) 2	27.210
	CNS0095600	Silvery flower (diploied) 3	34.679
	CNS0095601	Golden flower (diploid) 1	26.722
	CNS0095602	Golden flower (diploid) 2	33.254
	CNS0095603	Golden flower (diploid) 3	34.572
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.846
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.236
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.295
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.192
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.619
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.961
	CNS0095610	Silvery flower (tetraploid) 1	34.791
	CNS0095611	Silvery flower (tetraploid) 2	33.733
	CNS0095612	Silvery flower (tetraploid) 3	29.402
	CNS0095613	Golden flower (tetraploid) 1	19.970
	CNS0095614	Golden flower (tetraploid) 2	27.711
	CNS0095615	Golden flower (tetraploid) 3	24.448
CRA001975	CRR073297	Stem 1	25.679
	CRR073298	Stem 2	21.943
	CRR073299	Stem 3	22.965
	CRR073300	Leaf 1	30.077
	CRR073301	Leaf 2	26.443
	CRR073302	Leaf 3	24.745
	CRR073303	Juvenile bud 1	32.448
	CRR073304	Juvenile bud 2	22.571
	CRR073305	Juvenile bud 3	33.280
	CRR073306	Third green 1	19.040
	CRR073307	Third green 2	18.544
	CRR073308	Third green 3	18.258
	CRR073309	Second white 1	20.723
	CRR073310	Second white 2	21.086
	CRR073311	Second white 3	19.613
	CRR073312	Silver flowering 1	17.178
	CRR073313	Silver flowering 2	21.166
	CRR073314	Silver flowering 3	17.027
	CRR073315	Gold flowering 1	16.169
	CRR073316	Gold flowering 2	23.896
	CRR073317	Gold flowering 3	18.103
	CRR073318	Tawny withering 1	28.267
	CRR073319	Tawny withering 2	31.629
	CRR073320	Tawny withering 3	28.518