Detail information of GWHGAAZE026876


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011085636.13.07672E-96PREDICTED: uncharacterized protein LOC105167560 [Sesamum indicum]
trEMBLtr|B9I5K5|B9I5K5_POPTR9E-80Uncharacterized protein {ECO:0000313|EMBL:EEE95833.1}
TAIR10AT2G14830.16E-36Regulator of Vps4 activity in the MVB pathway protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1142026311422217-
GWHAAZE00000008mRNA1142026311422217-
GWHAAZE00000008exon1142211411422217-
GWHAAZE00000008exon1142184711422018-
GWHAAZE00000008exon1142133511421469-
GWHAAZE00000008exon1142026311421231-
GWHAAZE00000008CDS1142211411422217-
GWHAAZE00000008CDS1142184711422018-
GWHAAZE00000008CDS1142133511421469-
GWHAAZE00000008CDS1142026311421231-
Transcript Sequence

Network for GWHGAAZE026876

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03398.15Ist111178.40E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K19476IST1 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0015031biological_processprotein transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf4.134
SRR3591707mature leaf19.434
SRR3591708Shoot apex1.515
SRR3591709Stem0.410
SRR3591710White floral bud5.797
SRR3591711White flower0.460
SRR3591712Green floral bud2.853
SRR3591713Yellow flower1.375
SRP173429 SRR8316895Juvenile bud stage 2.509
SRR8316896Juvenile bud stage 4.497
SRR8316897Juvenile bud stage 1.645
SRR8316894Third green stage 0.953
SRR8316900Third green stage 0.855
SRR8316901Third green stage 1.132
SRR8316898Complete white stage 0.243
SRR8316899Complete white stage 0.319
SRR8316903Complete white stage 0.074
SRR8316902Silver flowering stage0.030
SRR8316904Silver flowering stage0.199
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.596
SRR8316907Gold flowering stage 0.688
SRR8316908Gold flowering stage 0.412
SRP132670SRR6706286Control1.417
SRR6706287Light intensity 50%0.485
SRR6706288Light intensity 20%0.441
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.081
CNS0095593Slightly white alabastrum(diploid) 22.585
CNS0095594Slightly white alabastrum(diploid) 35.482
CNS0095595Whole white alabastrum(diploid) 21.200
CNS0095596Whole white alabastrum(diploid) 30.862
CNS0095597Whole white alabastrum(diploid) 40.889
CNS0095598Silvery flower (diploied) 10.333
CNS0095599Silvery flower (diploied) 20.312
CNS0095600Silvery flower (diploied) 30.198
CNS0095601Golden flower (diploid) 10.319
CNS0095602Golden flower (diploid) 20.377
CNS0095603Golden flower (diploid) 30.529
CNS0095604Slightly white alabastrum(tetraploid) 10.703
CNS0095605Slightly white alabastrum(tetraploid) 21.580
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.559
CNS0095609Whole white alabastrum(tetraploid) 30.084
CNS0095610Silvery flower (tetraploid) 10.234
CNS0095611Silvery flower (tetraploid) 20.056
CNS0095612Silvery flower (tetraploid) 30.131
CNS0095613Golden flower (tetraploid) 10.324
CNS0095614Golden flower (tetraploid) 20.091
CNS0095615Golden flower (tetraploid) 30.141
CRA001975CRR073297Stem 11.761
CRR073298Stem 20.814
CRR073299Stem 31.135
CRR073300Leaf 10.798
CRR073301Leaf 20.287
CRR073302Leaf 30.137
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.357
CRR073305Juvenile bud 30.000
CRR073306Third green 10.018
CRR073307Third green 20.005
CRR073308Third green 30.039
CRR073309Second white 10.000
CRR073310Second white 20.208
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.134
CRR073314Silver flowering 30.032
CRR073315Gold flowering 15.739
CRR073316Gold flowering 211.998
CRR073317Gold flowering 33.632
CRR073318Tawny withering 18.690
CRR073319Tawny withering 24.105
CRR073320Tawny withering 310.222