Gene detail

Detail information of GWHGAAZE026873

Functional Annotation

Database	Orthologs	Annotation
Nr	AEY85031.1	putative pre-mRNA splicing factor [Camellia sinensis]
Swissprot	tr\|Q9ZT71\|STA1_ARATH	Protein STABILIZED1
trEMBL	tr\|H6UJ39\|H6UJ39_CAMSI	Putative pre-mRNA splicing factor {ECO:0000313\|EMBL:AEY85031.1}
TAIR10	AT4G03430.1	pre-mRNA splicing factor-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	11381775	11384609	+
GWHAAZE00000008	mRNA	11381775	11384609	+
GWHAAZE00000008	exon	11381775	11381904	+
GWHAAZE00000008	exon	11381962	11383860	+
GWHAAZE00000008	exon	11384017	11384609	+
GWHAAZE00000008	CDS	11381775	11381904	+
GWHAAZE00000008	CDS	11381962	11383860	+
GWHAAZE00000008	CDS	11384017	11384609	+

Transcript Sequence
>GWHTAAZE026907 ATGCAAGCCCCTGTAGCACCAAAAAACAGATTAGAATTCCTCAATACAAAACCCCCACCCAATTATGTGGCTGGATTGGGCCGCGGTGCCACTGGCTTCACTACTAGGTCCGATATTGGACCTGCGCGTGGGATTGGCCGTGGGAGGGGGAAAGGGCCTGGAGAGGAAGAGGAGGAGGATGAGGCTGATGAAAAGGGCTACGATGAGAATCAAAAGTTTGATGAGTTTGAGGGGAATGATGTTGGATTGTTTGCATCGGCTGAGTATGATGAGGATGATAAAGAGGCCGATATGGTGTGGGAGAGTATTGATATGAGGATGGATTCGAGGCGGAAGGATAGGAGGGAGGCTAGGTTGAAGCAAGAGATTGAGAAATACCGGGCTTCAAACCCTAAAATTACCGAGCAGTTTGCTGATCTCAAGAGGAAATTGCATACATTGTCTACTGAGGAATGGGATAGTATTCCTGAAATTGGGGATTATTCGTTGAGGAATAAGAAGAAGAGGTTTGAGAGTTTTGTGCCAGTTCCGGATACCCTTCTTGAGAAGGCAAGGCAAGAAAAAGAACATGTTACTGCACTGGATCCTAAGAGTAGGGCAGCTGGTGGGACCGAGACGCCTTGGGCTCAAACTCCGGTTACTGATTTGACTGCGGTTGGTGAGGGCAGAGGAACGGTGTTATCGTTGAAGTTGGACAGGCTTTCGGATTCTGTGTCAGGGTTAACTGTTGTTGACCCGAAGGGTTATTTGACTGATCTTAAGAGTATGAAGATTACTAGTGATGCAGAGATATCGGACATTAAGAAGGCTAGATTGCTACTTAAGTCTGTTATCCAAACAAATCCGAAGCACCCTCCTGGTTGGATTGCGGCTGCTAGGTTGGAGGAAGTTGCCGGTAAGATTCAAGTTGCAAGGCAGTTGATAAAGAAAGGTTGCGAGGAGTGCCCCAAAAACGAGGATGTTTGGATAGAGGCATGTCGATTATCGAGCCCCGATGAAGCCAAGGCTGTGATAGCCAAGGGAGTGAAAGCAATTCCTAATTCAGTGAAATTGTGGATGCAAGCTGCAAAGTTGGAGCATGATGATGCTAGTAAGAGTAGGGTTCTGAGGAAAGGGCTTGAACAAATACCCGATTCCGTGAGGCTCTGGAAGGCAGTTGTGGAGCTAGCCAACGAGGAGGATGCAAGGCTTTTGCTTCAGAGGGCTGTGGAATGTTGTCCTTTGCATGTTGAATTGTGGCTTGCTCTGGCAAGATTGGAAACCTATGACAATGCTAAGAAGGTTCTTAATAAGGCGAGGGAAAAACTACCGAAAGAGCCGGCTATTTGGATCACTGCGGCGAAGTTGGAAGAAGCTAATGGGAACACGGCCATGGTTGGGAAGATTATAGAGAGGGGTATTCGGGCTTTGCAGAGAGAGGGGTTGGGGATTGACCGAGAAGCTTGGATGAAGGAGGCCGAGGCTGCTGAACGAGCAGGCTCGGTGGCGACTTGCAATGCTATAATCAGTAACACTATTGGGATTGGAGTTGAAGAAGAAGATCGGAAGAGGACTTGGGTTGCTGATGCGGAGGAGTGCAAGAAAAGGGGTTCGATTGAGACGGCTAGGGCTATCTATGCTCATGCTCTTACCGTGTTCTTAACAAAGAAGAGTATATGGCTCAAAGCGGCTCAACTCGAAAAGAGCCACGGGACCAAGGAATCTCTTGATGCTCTACTTCGTAAAGCGGTTACTTACAGACCTCAGGCTGAAGTACTGTGGTTAATGGGTGCCAAAGAGAAGTGGCTTGCCGGTGATGTGCCTGCAGCTCGGGCAATTCTTCAAGAGGCATATGCTGCAATACCCAATTCTGAGGAGATTTGGCTTGCTGCATTTAAGCTCGAATTCGAGAATAATGAGCCTGAAAGGGCTAGAATGCTTCTTGCAAAAGCCCGTGAACGGGGTGGCACCGAGAGAGTTTGGATGAAATCAGCCATTGTCGAGCGTGAATTGGGGAACATTGCTGATGAGAGGAGGTTGCTTGATGAAGAAGAGAGAATGAATGGGCTGAGCAAAGCTCGAGCAGTTCTCACTATGGCCAGGAAAAAGAACCCTCAGAACCCTGAACTCTGGCTAGCTGCTGTTCGAGCCGAATCTAGACACGGGTTCAAGAAAGAATCCGATATCTTAATGGCCAAGGCATTACAAGAGTGCCCCAACAGCGGTATCTTATGGGCAGCTTCAATCGAAATGGTCCCCCGACCACAACGCAAAACAAAGAGCATAGACGCGCTCAAAAGATGTGACCATGATCCTCATGTTATTGCTGCGGTAGCTAAGTTATTTTGGCATGATAGGAAGGTTGACAAAGCTAGGACTTGGCTCAACAGGGCCGTCACTCTAGCACCAGATATTGGGGATTTTTGGGCTTTGTACTTTAAATTTGAACTACAGCATGGAAGTGAAGATAATCAAAAGGATGTATTGAGGAGGTGCATTGCTGCAGAACCAAAGCATGGTGAGAAGTGGCAAATTTTATCGAAAGCTGTGGAGAATTCCCATCAACCAACAGAAGCTATCTTAAAGAAAGTAGTAGTTGTACTCGGGAAGGAAGAGAGTTCTGCTGAAGATAACAAACACTAG

Network for GWHGAAZE026873

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06424.13	PRP1_N	18	164	5.30E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12855	PRPF6, PRP6	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0006396	biological_process	RNA processing
GO:0000398	biological_process	mRNA splicing, via spliceosome
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.098
	SRR3591706	second leaf	15.043
	SRR3591707	mature leaf	14.836
	SRR3591708	Shoot apex	21.863
	SRR3591709	Stem	12.214
	SRR3591710	White floral bud	18.262
	SRR3591711	White flower	23.365
	SRR3591712	Green floral bud	17.603
	SRR3591713	Yellow flower	14.300
SRP173429	SRR8316895	Juvenile bud stage	14.833
	SRR8316896	Juvenile bud stage	20.081
	SRR8316897	Juvenile bud stage	8.435
	SRR8316894	Third green stage	8.045
	SRR8316900	Third green stage	17.243
	SRR8316901	Third green stage	17.741
	SRR8316898	Complete white stage	5.599
	SRR8316899	Complete white stage	19.860
	SRR8316903	Complete white stage	14.622
	SRR8316902	Silver flowering stage	8.387
	SRR8316904	Silver flowering stage	12.386
	SRR8316905	Silver flowering stage	5.702
	SRR8316906	Gold flowering stage	17.166
	SRR8316907	Gold flowering stage	19.079
	SRR8316908	Gold flowering stage	20.592
SRP132670	SRR6706286	Control	23.548
	SRR6706287	Light intensity 50%	23.647
	SRR6706288	Light intensity 20%	23.405
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.906
	CNS0095593	Slightly white alabastrum(diploid) 2	10.858
	CNS0095594	Slightly white alabastrum(diploid) 3	11.294
	CNS0095595	Whole white alabastrum(diploid) 2	10.698
	CNS0095596	Whole white alabastrum(diploid) 3	9.796
	CNS0095597	Whole white alabastrum(diploid) 4	8.808
	CNS0095598	Silvery flower (diploied) 1	18.904
	CNS0095599	Silvery flower (diploied) 2	19.188
	CNS0095600	Silvery flower (diploied) 3	25.223
	CNS0095601	Golden flower (diploid) 1	22.002
	CNS0095602	Golden flower (diploid) 2	29.180
	CNS0095603	Golden flower (diploid) 3	28.193
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.878
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.676
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.907
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.983
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.171
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.937
	CNS0095610	Silvery flower (tetraploid) 1	27.048
	CNS0095611	Silvery flower (tetraploid) 2	25.297
	CNS0095612	Silvery flower (tetraploid) 3	22.651
	CNS0095613	Golden flower (tetraploid) 1	14.516
	CNS0095614	Golden flower (tetraploid) 2	22.653
	CNS0095615	Golden flower (tetraploid) 3	21.485
CRA001975	CRR073297	Stem 1	29.518
	CRR073298	Stem 2	26.085
	CRR073299	Stem 3	28.975
	CRR073300	Leaf 1	27.927
	CRR073301	Leaf 2	25.312
	CRR073302	Leaf 3	19.889
	CRR073303	Juvenile bud 1	21.430
	CRR073304	Juvenile bud 2	15.904
	CRR073305	Juvenile bud 3	31.859
	CRR073306	Third green 1	12.920
	CRR073307	Third green 2	7.262
	CRR073308	Third green 3	12.535
	CRR073309	Second white 1	11.780
	CRR073310	Second white 2	11.615
	CRR073311	Second white 3	15.030
	CRR073312	Silver flowering 1	15.020
	CRR073313	Silver flowering 2	18.071
	CRR073314	Silver flowering 3	14.199
	CRR073315	Gold flowering 1	13.274
	CRR073316	Gold flowering 2	17.248
	CRR073317	Gold flowering 3	14.942
	CRR073318	Tawny withering 1	19.153
	CRR073319	Tawny withering 2	14.057
	CRR073320	Tawny withering 3	14.048