Detail information of GWHGAAZE026866


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007043582.12.93061E-93RING membrane-anchor 1, putative isoform 1 [Theobroma cacao]
Swissprottr|Q6R567|RMA1_CAPAN3E-88E3 ubiquitin-protein ligase RMA1H1
trEMBLtr|A0A061EAU9|A0A061EAU9_THECC1E-93RING membrane-anchor 1, putative isoform 1 {ECO:0000313|EMBL:EOX99413.1}
TAIR10AT4G03510.22E-45RING membrane-anchor 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1132799011328709+
GWHAAZE00000008mRNA1132799011328709+
GWHAAZE00000008exon1132799011328709+
GWHAAZE00000008CDS1132799011328709+
Transcript Sequence

Network for GWHGAAZE026866

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00097.26zf-C3HC447955.80E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K10666RNF5 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.950
SRR3591706second leaf49.316
SRR3591707mature leaf17.617
SRR3591708Shoot apex76.082
SRR3591709Stem14.226
SRR3591710White floral bud22.018
SRR3591711White flower41.389
SRR3591712Green floral bud14.629
SRR3591713Yellow flower78.641
SRP173429 SRR8316895Juvenile bud stage 11.713
SRR8316896Juvenile bud stage 23.800
SRR8316897Juvenile bud stage 6.469
SRR8316894Third green stage 5.352
SRR8316900Third green stage 18.176
SRR8316901Third green stage 21.113
SRR8316898Complete white stage 20.332
SRR8316899Complete white stage 18.905
SRR8316903Complete white stage 30.021
SRR8316902Silver flowering stage42.465
SRR8316904Silver flowering stage39.675
SRR8316905Silver flowering stage27.962
SRR8316906Gold flowering stage 122.977
SRR8316907Gold flowering stage 94.077
SRR8316908Gold flowering stage 81.454
SRP132670SRR6706286Control21.069
SRR6706287Light intensity 50%20.449
SRR6706288Light intensity 20%18.132
CNP0000432CNS0095592Slightly white alabastrum(diploid) 130.181
CNS0095593Slightly white alabastrum(diploid) 225.667
CNS0095594Slightly white alabastrum(diploid) 323.322
CNS0095595Whole white alabastrum(diploid) 221.259
CNS0095596Whole white alabastrum(diploid) 323.636
CNS0095597Whole white alabastrum(diploid) 418.879
CNS0095598Silvery flower (diploied) 124.920
CNS0095599Silvery flower (diploied) 239.463
CNS0095600Silvery flower (diploied) 378.588
CNS0095601Golden flower (diploid) 158.398
CNS0095602Golden flower (diploid) 279.298
CNS0095603Golden flower (diploid) 373.844
CNS0095604Slightly white alabastrum(tetraploid) 17.287
CNS0095605Slightly white alabastrum(tetraploid) 29.957
CNS0095606Slightly white alabastrum(tetraploid) 38.304
CNS0095607Whole white alabastrum(tetraploid) 16.048
CNS0095608Whole white alabastrum(tetraploid) 29.294
CNS0095609Whole white alabastrum(tetraploid) 39.133
CNS0095610Silvery flower (tetraploid) 184.724
CNS0095611Silvery flower (tetraploid) 299.130
CNS0095612Silvery flower (tetraploid) 3142.547
CNS0095613Golden flower (tetraploid) 193.759
CNS0095614Golden flower (tetraploid) 287.670
CNS0095615Golden flower (tetraploid) 3168.371
CRA001975CRR073297Stem 128.532
CRR073298Stem 230.237
CRR073299Stem 328.441
CRR073300Leaf 130.952
CRR073301Leaf 233.148
CRR073302Leaf 329.048
CRR073303Juvenile bud 126.594
CRR073304Juvenile bud 225.277
CRR073305Juvenile bud 326.448
CRR073306Third green 136.195
CRR073307Third green 221.080
CRR073308Third green 319.087
CRR073309Second white 133.067
CRR073310Second white 233.566
CRR073311Second white 321.572
CRR073312Silver flowering 129.751
CRR073313Silver flowering 246.106
CRR073314Silver flowering 334.668
CRR073315Gold flowering 135.253
CRR073316Gold flowering 234.898
CRR073317Gold flowering 329.566
CRR073318Tawny withering 134.197
CRR073319Tawny withering 223.994
CRR073320Tawny withering 324.349