Gene detail

Detail information of GWHGAAZE026858

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI21859.3	0	unnamed protein product [Vitis vinifera]
COG	YP_004571825.1	5E-21	serine/threonine protein kinase
Swissprot	tr\|Q9S9U1\|LRK71_ARATH	0	L-type lectin-domain containing receptor kinase VII.1 (Precursor)
trEMBL	tr\|F6H5D8\|F6H5D8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47287.1}
TAIR10	AT4G28350.1	5E-146	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	11128554	11130596	-
GWHAAZE00000008	mRNA	11128554	11130596	-
GWHAAZE00000008	exon	11129810	11130596	-
GWHAAZE00000008	exon	11129721	11129764	-
GWHAAZE00000008	exon	11128554	11129663	-
GWHAAZE00000008	CDS	11129810	11130596	-
GWHAAZE00000008	CDS	11129721	11129764	-
GWHAAZE00000008	CDS	11128554	11129663	-

Transcript Sequence
>GWHTAAZE026892 ATGCTTCCCCAACCACTAATCATCCTCCTGTTCATCCTCCTCCACCGCACCTCCGCCGTGGACATACTCTTTAACACCTTCAACTCCACCTCCCTCCTCCTCTACGGCGTCACCACCGTCCAATCCTCAGTCCTCACCCTCACAGACTCCACCCCTTTTTCCGTTGGCAGAGCCCTTTACCCAACACCAATCCCCACCAAAAAACCTAACAATTCCTCTCTCCTCCTCCCCTTTTCAACCTCCTTCATTTTCTCCATCTCCCCTTACCCTAATCGCCTCCCTGGCCACGGATTTGCTTTCCTCTTCGCACCCACCTTTGGAATCAATGGCACAAGTTCCTCTCAGCATTTGGGTCTCCTCAATTTCACCAACAATGGCAATTCTAACAACCGCCTTTTTGCTATCAAGTTTGATGTGTTTGAGAACCAAGAATTTAATGATGTTAGCAATAATCATGTGGGTGTTAATGTGAATTCTCTTACTTCTTTTGTGGCTAGTGAAGCTGGGTATTGGGTTGGGGGTGTTGATAGTTCGGATTTTAGGGATTTAAAGTTGAATAATGGGGAGAATTATCAGGTTTGGATTGATTACTTGGATTCAAGAATTATTGTTACTATGGCTAGGGTGGGGATGAGGAGGCCTCAAAGGCCATTGATTAATGCTAGTCTTGACCTTGGTATGGTTTTCTTGGATCAAATGTATATTGGGTTTGGTGGTGCAACTGGACAATTGGTTGAAAGTCATAGGATTTTGTCTTGGGCGTTTAGCAATTCGAATTTTTCGATTGATCGTTCGGTTTTTCATTCCAAAAGGTTCATTGTAGGTGTTAGTAGGAGAAAAAGGAAGCAAGGGGTGGAAGAGGAATTGGAAGATTGGGAACTGCAGTATTGGCCGCATCGGATTGATTATCAAGAGATTTTTAGTGCAACAAATGGTTTTTCGGACGAAAATATAATTGGGTATGGTGGAAATGGCAAAGTCTATAGAGGGGTATTGTTAGGAGGTGTTGTAGTTGCGGTTAAGCGCATTTCGCTTGGAAATGAAGATGGAATGAAAGAATTCTTGGCCGAGGTTTCAAGTTTAGGTAGATTGAAGCATAGAAACTTGGTAGGATTGAGAGGTTGGTGTAAGGGAGACAAGAAGAGCTTGATTCTAATTTATGATTATATGGAAAATGGGAGTTTGGATAAAAGGGTTTTTGAGTGTGAAGAGAGTAGATTGTTGAGTTGGGAAGAGAGGGTTAAGGCCTTAAAAGATGTGGCTAGTGGTGTCTTGTATTTGCATGATGGATGGGAATCTACGGTTTTGCATAGAGACATTAAGGCAAGCAATGTGTTGCTTGATAAGGACATGGTAGCAAGATTAGGCGATTTTGGGTTAGCCCGGATGCACCACCACGGTCAATCAGCTAGCACAACAAGAGTGGTGGGCACGGTGGGGTACATGGCACCGGAAGTGGTGAGAACCGGGCGAGCATCGGCGCAGACCGACGTGTTTGGGTTCGGGGTCTTGGTTCTTGAAGTGGTATGCGGGCGTAGACCCATTGAAGAAGGGAAAATGGGGTTGGTTGATTGGGTATTCGGGCTAATGGAGCGAGGGGAATTGTTTAATGCTATTGATGAGAGGTTAAAGGCCAAGGGTGGGTATGTTAAAGAGGAAGCTTTGAGGGTTGTACATTTGGGATTGTTGTGTGTACATCCTGACCCGAATAAACGGCCCCTGATGAGGCAAGTCTTGAAGGTGCTTGAAGGAACAAGCGAGGGGAATCAGTCTGAGGGGGAGGGGGAGGGAATTGAAATGAATTTGCTCGGGCCTATGATTTGGTCTAATTACGGTCAAAACGGTGGTGGATTAGGACATCCAACATATGAGGATATTCGCAGGGCTTCAACTTCTTCGATTTCATTGAATTGGTCAGATATTATCTCCGAGGGTCGGTAA

Network for GWHGAAZE026858

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	23	260	2.00E-58
PF00069.26	Pkinase	314	580	5.40E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.402
	SRR3591706	second leaf	4.133
	SRR3591707	mature leaf	5.410
	SRR3591708	Shoot apex	3.702
	SRR3591709	Stem	7.099
	SRR3591710	White floral bud	8.888
	SRR3591711	White flower	12.544
	SRR3591712	Green floral bud	4.681
	SRR3591713	Yellow flower	12.006
SRP173429	SRR8316895	Juvenile bud stage	2.802
	SRR8316896	Juvenile bud stage	2.782
	SRR8316897	Juvenile bud stage	1.707
	SRR8316894	Third green stage	0.713
	SRR8316900	Third green stage	2.194
	SRR8316901	Third green stage	2.658
	SRR8316898	Complete white stage	0.627
	SRR8316899	Complete white stage	3.002
	SRR8316903	Complete white stage	1.977
	SRR8316902	Silver flowering stage	1.540
	SRR8316904	Silver flowering stage	2.688
	SRR8316905	Silver flowering stage	1.812
	SRR8316906	Gold flowering stage	6.857
	SRR8316907	Gold flowering stage	4.133
	SRR8316908	Gold flowering stage	6.458
SRP132670	SRR6706286	Control	2.860
	SRR6706287	Light intensity 50%	3.239
	SRR6706288	Light intensity 20%	2.548
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.666
	CNS0095593	Slightly white alabastrum(diploid) 2	4.004
	CNS0095594	Slightly white alabastrum(diploid) 3	2.793
	CNS0095595	Whole white alabastrum(diploid) 2	3.324
	CNS0095596	Whole white alabastrum(diploid) 3	1.725
	CNS0095597	Whole white alabastrum(diploid) 4	2.847
	CNS0095598	Silvery flower (diploied) 1	3.388
	CNS0095599	Silvery flower (diploied) 2	3.427
	CNS0095600	Silvery flower (diploied) 3	4.515
	CNS0095601	Golden flower (diploid) 1	6.711
	CNS0095602	Golden flower (diploid) 2	7.027
	CNS0095603	Golden flower (diploid) 3	6.216
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.071
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.546
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.602
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.884
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.188
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.888
	CNS0095610	Silvery flower (tetraploid) 1	3.136
	CNS0095611	Silvery flower (tetraploid) 2	2.384
	CNS0095612	Silvery flower (tetraploid) 3	4.118
	CNS0095613	Golden flower (tetraploid) 1	2.429
	CNS0095614	Golden flower (tetraploid) 2	3.679
	CNS0095615	Golden flower (tetraploid) 3	1.378
CRA001975	CRR073297	Stem 1	2.355
	CRR073298	Stem 2	3.866
	CRR073299	Stem 3	1.278
	CRR073300	Leaf 1	4.720
	CRR073301	Leaf 2	5.680
	CRR073302	Leaf 3	1.617
	CRR073303	Juvenile bud 1	2.399
	CRR073304	Juvenile bud 2	2.014
	CRR073305	Juvenile bud 3	4.968
	CRR073306	Third green 1	4.119
	CRR073307	Third green 2	2.591
	CRR073308	Third green 3	2.627
	CRR073309	Second white 1	1.437
	CRR073310	Second white 2	0.907
	CRR073311	Second white 3	1.197
	CRR073312	Silver flowering 1	2.960
	CRR073313	Silver flowering 2	1.794
	CRR073314	Silver flowering 3	1.431
	CRR073315	Gold flowering 1	0.227
	CRR073316	Gold flowering 2	1.994
	CRR073317	Gold flowering 3	1.695
	CRR073318	Tawny withering 1	3.527
	CRR073319	Tawny withering 2	8.251
	CRR073320	Tawny withering 3	3.027