Gene detail

Detail information of GWHGAAZE026847

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274770.2	0	PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1 [Vitis vinifera]
COG	YP_827622.1	0.000002	serine/threonine protein kinase
Swissprot	tr\|F4IVI0\|BUB1_ARATH	0	Mitotic checkpoint serine/threonine-protein kinase BUB1
trEMBL	tr\|E0CTG3\|E0CTG3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21878.3}
TAIR10	AT2G20635.1	5E-173	ATP binding;protein kinases;protein serine/threonine kinases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	10927494	10936052	+
GWHAAZE00000008	mRNA	10927494	10936052	+
GWHAAZE00000008	exon	10927494	10927528	+
GWHAAZE00000008	exon	10927617	10927683	+
GWHAAZE00000008	exon	10928402	10928559	+
GWHAAZE00000008	exon	10928820	10928910	+
GWHAAZE00000008	exon	10930776	10930886	+
GWHAAZE00000008	exon	10930974	10931061	+
GWHAAZE00000008	exon	10931702	10931805	+
GWHAAZE00000008	exon	10931912	10931983	+
GWHAAZE00000008	exon	10932070	10932159	+
GWHAAZE00000008	exon	10932246	10932403	+
GWHAAZE00000008	exon	10933195	10933249	+
GWHAAZE00000008	exon	10934305	10934443	+
GWHAAZE00000008	exon	10934533	10934650	+
GWHAAZE00000008	exon	10935863	10936052	+
GWHAAZE00000008	CDS	10927494	10927528	+
GWHAAZE00000008	CDS	10927617	10927683	+
GWHAAZE00000008	CDS	10928402	10928559	+
GWHAAZE00000008	CDS	10928820	10928910	+
GWHAAZE00000008	CDS	10930776	10930886	+
GWHAAZE00000008	CDS	10930974	10931061	+
GWHAAZE00000008	CDS	10931702	10931805	+
GWHAAZE00000008	CDS	10931912	10931983	+
GWHAAZE00000008	CDS	10932070	10932159	+
GWHAAZE00000008	CDS	10932246	10932403	+
GWHAAZE00000008	CDS	10933195	10933249	+
GWHAAZE00000008	CDS	10934305	10934443	+
GWHAAZE00000008	CDS	10934533	10934650	+
GWHAAZE00000008	CDS	10935863	10936052	+

Transcript Sequence
>GWHTAAZE026881 ATGGAGAACGACGACCCTCTCGTACAATATCTTTGGCCAATCAGCAAAGCCCTTGACAATCTGAATTCACCAGAAAATACCGGCACAGAGTTGGATGAGCTTATGGATGGTAGTTCAGATTTTGATAGCATCTTTAGACAAATGGAGGATTACAAGATATGTTTATATAATTCTCTTCGTTATGAGGCAGTTGCTATATTTTTGGAAGCAAAGGGCAAGTTGCACGATGCACACTCGGTTTACCAGCTGGGGATTTCAAGGAATGCTGAGCCAGTAGAGAGATTGAAGAAAGCACTGGCATTATTCCTTGAAAGAATGAGAGAAGTAGTGAATGCTTGTTCTCTTAAGAAGGTTGATTCTAGTGTTATTTTCGAAGACGGTGAAAAATGCACCAATCCATGGGCAATCACCACTATTAAAGATTTATTGCGGAAGATGAACACTCAGATCTTGAAATATGAAGGATACCATCAAAGTACTAAGGCTTATCCAGGAAAAGTGTCATTATCTTCTCTGCAGAAATCAGCTAGGAAAAAGGTTATTGAGATAGGTGGAAAGAAGTACCAGATCATAGGCTGTGCAGGTCAAGGTGGATTTGCACAAGTATTCAAAGCTTATATTGACTGTAATCCTGACGATATTGTTGCACTAAAGATACAAAAGCCTGCTTTCCCTTGGGAGTTTTACATGTATCGTCAACTCGATAAGAGGATCCCAGACAAGGAAAGATTGAGCTTTGGTCTTGCTCACAGATTACATCTCTATTCTGACTATAGTATACTTGTCTCTGATTATTTGGCTCATGGGATGCTTCAGGATGCCATAAATTCCAATGTAGTCATTGGCGGATTCATGGAAGAAGTTATGTGTATTTATTACACCATTGAGATGCTTTCCATGCTGGAAACTCTGCATGCCGCTGGCATTATTCATGGTGATTTCAAACCTGATAATCTGCTTATTCGCTATGCAAGAGATGATCTCACAGAAGATGGCTTCCGTGACCGCACTGGGCCTTGGCGTGATCAGGGTCTTTGCCTTGTTGACTGGGGTAGAGGAATAGACAAGAGTCTCTTCCCTGACAAGATGAAGTTCAAGGGAGACTGTCGAACTTCCGGCTTCCGTTGTATTGAAATGCAAGAGAACAAGCCTTGGACATTTCAGGCTAACACATATGGTCTCTGTGTTATAGTTCATATGATGCTTCACAATTCATATATGGAGATTGAAAAGAAAGCGACTTCTGATGGTGGTTACATTTATCAGCCGAAATCTTCTTTTAAGCGGTATTGGAAAGTGGAGCTATGGAAGAATCTTTTCACAAAGTTGCTGAACTTTAATCCAAGTGACGATCACGTCAAGTTATTGCAGAACTTGAGGGAGTCATTCCAAGATTATATGCAATCAAATCCACAGCTGATTAAAAAGCTGAAGCAGTTGCTTGTGAAGCAAAAATCTTCCTTGTGTACTTCTTAG

Network for GWHGAAZE026847

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	194	408	3.10E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	BUB

KEGG pathway

KO	Enzyme	pathway	mapID
K02178	BUB1	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.109
	SRR3591706	second leaf	1.414
	SRR3591707	mature leaf	0.348
	SRR3591708	Shoot apex	15.453
	SRR3591709	Stem	2.865
	SRR3591710	White floral bud	0.712
	SRR3591711	White flower	0.112
	SRR3591712	Green floral bud	0.675
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.715
	SRR8316896	Juvenile bud stage	1.945
	SRR8316897	Juvenile bud stage	0.941
	SRR8316894	Third green stage	0.490
	SRR8316900	Third green stage	1.119
	SRR8316901	Third green stage	0.714
	SRR8316898	Complete white stage	0.085
	SRR8316899	Complete white stage	0.797
	SRR8316903	Complete white stage	0.229
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.632
	SRR6706287	Light intensity 50%	0.245
	SRR6706288	Light intensity 20%	0.521
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.657
	CNS0095593	Slightly white alabastrum(diploid) 2	1.432
	CNS0095594	Slightly white alabastrum(diploid) 3	1.106
	CNS0095595	Whole white alabastrum(diploid) 2	0.191
	CNS0095596	Whole white alabastrum(diploid) 3	0.296
	CNS0095597	Whole white alabastrum(diploid) 4	0.363
	CNS0095598	Silvery flower (diploied) 1	0.227
	CNS0095599	Silvery flower (diploied) 2	1.613
	CNS0095600	Silvery flower (diploied) 3	0.283
	CNS0095601	Golden flower (diploid) 1	0.587
	CNS0095602	Golden flower (diploid) 2	0.139
	CNS0095603	Golden flower (diploid) 3	0.145
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.441
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.882
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.810
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.613
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.065
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.106
	CNS0095610	Silvery flower (tetraploid) 1	0.043
	CNS0095611	Silvery flower (tetraploid) 2	0.119
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.024
CRA001975	CRR073297	Stem 1	1.256
	CRR073298	Stem 2	2.024
	CRR073299	Stem 3	1.205
	CRR073300	Leaf 1	0.242
	CRR073301	Leaf 2	0.485
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.072
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.041
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.217
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.250
	CRR073317	Gold flowering 3	0.186
	CRR073318	Tawny withering 1	2.768
	CRR073319	Tawny withering 2	2.757
	CRR073320	Tawny withering 3	1.109