Gene detail

Detail information of GWHGAAZE026844

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009789499.1	1.09477E-96	PREDICTED: zinc finger CCCH domain-containing protein 61-like [Nicotiana sylvestris]
Swissprot	tr\|Q9ZWA1\|C3H2_ARATH	5E-74	Zinc finger CCCH domain-containing protein 2
trEMBL	tr\|A0A068V4M8\|A0A068V4M8_COFCA	7E-95	Coffea canephora DH200=94 genomic scaffold, scaffold_91 {ECO:0000313\|EMBL:CDP14823.1}
TAIR10	AT1G03790.1	2E-55	Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	10893988	10895147	-
GWHAAZE00000008	mRNA	10893988	10895147	-
GWHAAZE00000008	exon	10894720	10895147	-
GWHAAZE00000008	exon	10893988	10894510	-
GWHAAZE00000008	CDS	10894720	10895147	-
GWHAAZE00000008	CDS	10893988	10894510	-

Transcript Sequence
>GWHTAAZE026878 ATGTGTAGTGACCAAAAACAGTTCCGCACCTCCCACCAACTCTTCCATTCTCCTCCCCGTACGCTCCTCACGCGCCGCTCCATCTCCCCGGAAACCACCGATTTCCTCGCCATTGATTCCCCAAGAGCCGACTTTGCAAAATTCCTACCGCGCAACTCCCCCGCCGGCGACGAAGAATCCGACGGCCCCTACTCCTCCGATCACTTCCGCATCTACGAGTTCAAGGTCCGGCGATGCACTCGCAGCCGGAGCCACGACTGGACTGACTGCCCCTTTGCCCATCCAGGCGAGAAGGCCCGCCGCAGAGATCCCCGCCGCTACCGCTACTCTGGTGCCGTCTGCCCTGATTTCCGTCGGGGAAACTGTAGCAAGGGAGATAATTGCGATTTCGCACATGGGGTTTTTGAGCATTGGCTTCACCCTGCGAGGTACCGGACTGAGGCTTGTAAAGATGGTAAAAATTGCCAGCGGAAAATTTGTTTCTTCGCTCATACATCTCGCCAGCTTCGGGTTTTGCCTCCAAATTGCTATGAAAATACTTCCTCGCCGGTGAATTCCCCTCTTTCTAACGAGAGAATAAACTCCCCTGTTTTCGAGGAGAAAAATTATAGTCCCAATCATTGTTGTGTTCATTGTCGTCATAATTCTTTTGCCGGTTCACCTACTTCGCCTCTCTCACCTGTGAAATCCCGGCCAGTGACCAGATTTTCTTCTCCAATTTCAAGATTTGGGGATGGAATCGTCCATCGGGTGGCTACAGGGGAGATGAGTTACAGTGATGGATTAACAGAGTTGGCGAATTCTTTAGAGGAGATTAAATTCAGTGAAGGCATTCCCAATCAATCGTTTGTTGATGTTTATGGGGATGATCAATTTATTATGTCCCCTTCAACTGTGAGTTCTTCTGTGTCTGTCGGCAGACGCAGGAGTTTCGCTGATGAGAGTTTTTTG

Network for GWHGAAZE026844

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	112	133	1.40E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.217
	SRR3591706	second leaf	0.726
	SRR3591707	mature leaf	0.228
	SRR3591708	Shoot apex	3.890
	SRR3591709	Stem	0.436
	SRR3591710	White floral bud	12.719
	SRR3591711	White flower	21.850
	SRR3591712	Green floral bud	6.181
	SRR3591713	Yellow flower	2.342
SRP173429	SRR8316895	Juvenile bud stage	18.850
	SRR8316896	Juvenile bud stage	27.766
	SRR8316897	Juvenile bud stage	13.374
	SRR8316894	Third green stage	1.943
	SRR8316900	Third green stage	0.952
	SRR8316901	Third green stage	5.510
	SRR8316898	Complete white stage	0.693
	SRR8316899	Complete white stage	9.782
	SRR8316903	Complete white stage	2.595
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.072
	SRR8316905	Silver flowering stage	0.107
	SRR8316906	Gold flowering stage	0.050
	SRR8316907	Gold flowering stage	0.074
	SRR8316908	Gold flowering stage	0.236
SRP132670	SRR6706286	Control	3.492
	SRR6706287	Light intensity 50%	3.598
	SRR6706288	Light intensity 20%	3.637
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.652
	CNS0095593	Slightly white alabastrum(diploid) 2	13.032
	CNS0095594	Slightly white alabastrum(diploid) 3	13.301
	CNS0095595	Whole white alabastrum(diploid) 2	18.563
	CNS0095596	Whole white alabastrum(diploid) 3	0.482
	CNS0095597	Whole white alabastrum(diploid) 4	5.646
	CNS0095598	Silvery flower (diploied) 1	36.451
	CNS0095599	Silvery flower (diploied) 2	54.982
	CNS0095600	Silvery flower (diploied) 3	7.707
	CNS0095601	Golden flower (diploid) 1	35.327
	CNS0095602	Golden flower (diploid) 2	28.087
	CNS0095603	Golden flower (diploid) 3	26.898
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.885
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.708
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.395
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.161
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.056
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.783
	CNS0095610	Silvery flower (tetraploid) 1	0.386
	CNS0095611	Silvery flower (tetraploid) 2	6.567
	CNS0095612	Silvery flower (tetraploid) 3	3.153
	CNS0095613	Golden flower (tetraploid) 1	0.696
	CNS0095614	Golden flower (tetraploid) 2	2.506
	CNS0095615	Golden flower (tetraploid) 3	0.066
CRA001975	CRR073297	Stem 1	17.187
	CRR073298	Stem 2	14.101
	CRR073299	Stem 3	19.704
	CRR073300	Leaf 1	4.829
	CRR073301	Leaf 2	8.971
	CRR073302	Leaf 3	5.479
	CRR073303	Juvenile bud 1	4.885
	CRR073304	Juvenile bud 2	1.476
	CRR073305	Juvenile bud 3	5.401
	CRR073306	Third green 1	0.412
	CRR073307	Third green 2	1.048
	CRR073308	Third green 3	0.654
	CRR073309	Second white 1	0.867
	CRR073310	Second white 2	0.043
	CRR073311	Second white 3	0.093
	CRR073312	Silver flowering 1	0.146
	CRR073313	Silver flowering 2	0.559
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.298
	CRR073316	Gold flowering 2	0.776
	CRR073317	Gold flowering 3	0.433
	CRR073318	Tawny withering 1	2.106
	CRR073319	Tawny withering 2	1.830
	CRR073320	Tawny withering 3	1.803