Detail information of GWHGAAZE026839


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010260316.14.35003E-74PREDICTED: uncharacterized protein At4g28440 [Nelumbo nucifera]
COGYP_003816198.11E-10single-strand DNA-binding protein
Swissprottr|O49453|Y4844_ARATH1E-59Uncharacterized protein At4g28440
trEMBLtr|A0A061GM87|A0A061GM87_THECC1E-73Nucleic acid-binding {ECO:0000313|EMBL:EOY28174.1}
TAIR10AT2G33845.14E-39Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1084205310843862-
GWHAAZE00000008mRNA1084205310843862-
GWHAAZE00000008exon1084205310842249-
GWHAAZE00000008exon1084361610843862-
GWHAAZE00000008CDS1084361610843862-
GWHAAZE00000008CDS1084205310842249-
Transcript Sequence

Network for GWHGAAZE026839

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K07466RFA1, RPA1, rpa DNA replication map03030
Nucleotide excision repairmap03420
Mismatch repairmap03430
Homologous recombinationmap03440
Fanconi anemia pathwaymap03460

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf44.762
SRR3591706second leaf24.028
SRR3591707mature leaf17.026
SRR3591708Shoot apex60.938
SRR3591709Stem36.615
SRR3591710White floral bud32.430
SRR3591711White flower42.063
SRR3591712Green floral bud47.225
SRR3591713Yellow flower32.418
SRP173429 SRR8316895Juvenile bud stage 42.186
SRR8316896Juvenile bud stage 54.624
SRR8316897Juvenile bud stage 24.730
SRR8316894Third green stage 21.799
SRR8316900Third green stage 58.378
SRR8316901Third green stage 58.331
SRR8316898Complete white stage 14.558
SRR8316899Complete white stage 70.105
SRR8316903Complete white stage 24.588
SRR8316902Silver flowering stage20.312
SRR8316904Silver flowering stage15.476
SRR8316905Silver flowering stage11.908
SRR8316906Gold flowering stage 34.815
SRR8316907Gold flowering stage 38.930
SRR8316908Gold flowering stage 36.061
SRP132670SRR6706286Control72.398
SRR6706287Light intensity 50%72.809
SRR6706288Light intensity 20%69.661
CNP0000432CNS0095592Slightly white alabastrum(diploid) 158.522
CNS0095593Slightly white alabastrum(diploid) 272.420
CNS0095594Slightly white alabastrum(diploid) 366.606
CNS0095595Whole white alabastrum(diploid) 252.844
CNS0095596Whole white alabastrum(diploid) 355.885
CNS0095597Whole white alabastrum(diploid) 442.655
CNS0095598Silvery flower (diploied) 147.442
CNS0095599Silvery flower (diploied) 240.588
CNS0095600Silvery flower (diploied) 342.291
CNS0095601Golden flower (diploid) 135.776
CNS0095602Golden flower (diploid) 233.490
CNS0095603Golden flower (diploid) 336.840
CNS0095604Slightly white alabastrum(tetraploid) 146.895
CNS0095605Slightly white alabastrum(tetraploid) 241.713
CNS0095606Slightly white alabastrum(tetraploid) 355.420
CNS0095607Whole white alabastrum(tetraploid) 134.188
CNS0095608Whole white alabastrum(tetraploid) 229.192
CNS0095609Whole white alabastrum(tetraploid) 344.433
CNS0095610Silvery flower (tetraploid) 137.991
CNS0095611Silvery flower (tetraploid) 234.488
CNS0095612Silvery flower (tetraploid) 332.269
CNS0095613Golden flower (tetraploid) 127.293
CNS0095614Golden flower (tetraploid) 234.226
CNS0095615Golden flower (tetraploid) 327.766
CRA001975CRR073297Stem 148.486
CRR073298Stem 244.321
CRR073299Stem 356.882
CRR073300Leaf 149.665
CRR073301Leaf 249.687
CRR073302Leaf 353.605
CRR073303Juvenile bud 154.356
CRR073304Juvenile bud 238.156
CRR073305Juvenile bud 341.316
CRR073306Third green 111.289
CRR073307Third green 214.856
CRR073308Third green 314.871
CRR073309Second white 114.111
CRR073310Second white 218.728
CRR073311Second white 314.842
CRR073312Silver flowering 115.869
CRR073313Silver flowering 217.574
CRR073314Silver flowering 312.228
CRR073315Gold flowering 127.529
CRR073316Gold flowering 234.105
CRR073317Gold flowering 318.203
CRR073318Tawny withering 145.792
CRR073319Tawny withering 243.171
CRR073320Tawny withering 357.104