Gene detail

Detail information of GWHGAAZE026824

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAC41517.1	3.0563E-122	Rac small GTPase [Zinnia elegans]
COG	YP_003319433.1	5E-12	small GTP-binding protein
Swissprot	tr\|Q6Z7L8\|RAC7_ORYSJ	4E-123	Rac-like GTP-binding protein 7 (Precursor)
trEMBL	tr\|Q8H0D5\|Q8H0D5_ZINVI	1E-122	Rac small GTPase {ECO:0000313\|EMBL:BAC41517.1}
TAIR10	AT5G45970.1	4E-91	RAC-like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	10609351	10611758	+
GWHAAZE00000008	mRNA	10609351	10611758	+
GWHAAZE00000008	exon	10609351	10609455	+
GWHAAZE00000008	exon	10609564	10609651	+
GWHAAZE00000008	exon	10610072	10610181	+
GWHAAZE00000008	exon	10610313	10610376	+
GWHAAZE00000008	exon	10610638	10610702	+
GWHAAZE00000008	exon	10611364	10611429	+
GWHAAZE00000008	exon	10611663	10611758	+
GWHAAZE00000008	CDS	10609351	10609455	+
GWHAAZE00000008	CDS	10609564	10609651	+
GWHAAZE00000008	CDS	10610072	10610181	+
GWHAAZE00000008	CDS	10610313	10610376	+
GWHAAZE00000008	CDS	10610638	10610702	+
GWHAAZE00000008	CDS	10611364	10611429	+
GWHAAZE00000008	CDS	10611663	10611758	+

Transcript Sequence
>GWHTAAZE026858 ATGAACACATGTACAGCAAGATTCATCAAGTGTGTTACTGTGGGTGATGGAGCAGTGGGGAAGACATGCATGCTTATCTCTTATACTAGCAATACCTTTCCTACTGATTATGTACCCACAGTGTTTGACAACTTTAGTGCTAATGTGGTAGTTGATGGTAGTACTGTTAATCTTGGACTTTGGGATACTGCAGGGCAGGAAGATTATAACAGGCTGAGGCCTTTAAGTTACAGAGGTGCTGATGTTTTCTTGTTGGCCTTCTCTCTCATTAGTAGAGCCAGCTATGAAAACATTTCAAAAAAGTGGATACCCGAGCTCAGGCATTATGCTCCAACTGTGCCCATTGTGTTAGTTGGTACCAAACTAGATTTACGCGAAAACAAGCTGTTTTTGAGTGATCACCATGGTGCAACTGCAATCACAACAGCTCAGGGGGAGGAACTAAAGAGGATGATTGGTGCAGCTGTGTACATAGAATGCAGCTCTAAGACTCAGCAGAATGTGAAAGCTGTGTTTGATGCAGCAATCAAGGTTGTACTGCAGCCTCCTAAGCCAAAGAAAAGAAGAAAGACAAGGATATGTGTATATCTCTAA

Network for GWHGAAZE026824

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	10	180	1.30E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04392	RAC1	Ras signaling pathway	map04014
		Rap1 signaling pathway	map04015
		MAPK signaling pathway	map04010
		MAPK signaling pathway - fly	map04013
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		PI3K-Akt signaling pathway	map04151
		Phagosome	map04145
		Focal adhesion	map04510
		Adherens junction	map04520
		Tight junction	map04530
		Regulation of actin cytoskeleton	map04810
		Toll-like receptor signaling pathway	map04620
		Natural killer cell mediated cytotoxicity	map04650
		B cell receptor signaling pathway	map04662
		Fc epsilon RI signaling pathway	map04664
		Fc gamma R-mediated phagocytosis	map04666
		Leukocyte transendothelial migration	map04670
		Chemokine signaling pathway	map04062
		Pancreatic secretion	map04972
		Neurotrophin signaling pathway	map04722
		Axon guidance	map04360
		Axon regeneration	map04361
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0007264	biological_process	small GTPase mediated signal transduction
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	98.027
	SRR3591706	second leaf	7.558
	SRR3591707	mature leaf	0.558
	SRR3591708	Shoot apex	28.901
	SRR3591709	Stem	55.876
	SRR3591710	White floral bud	4.602
	SRR3591711	White flower	1.742
	SRR3591712	Green floral bud	3.910
	SRR3591713	Yellow flower	0.250
SRP173429	SRR8316895	Juvenile bud stage	3.285
	SRR8316896	Juvenile bud stage	3.507
	SRR8316897	Juvenile bud stage	1.957
	SRR8316894	Third green stage	1.635
	SRR8316900	Third green stage	0.197
	SRR8316901	Third green stage	1.756
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.824
	SRR8316903	Complete white stage	0.472
	SRR8316902	Silver flowering stage	0.004
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.130
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.084
	SRR6706287	Light intensity 50%	0.413
	SRR6706288	Light intensity 20%	0.262
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.320
	CNS0095593	Slightly white alabastrum(diploid) 2	4.806
	CNS0095594	Slightly white alabastrum(diploid) 3	5.824
	CNS0095595	Whole white alabastrum(diploid) 2	1.925
	CNS0095596	Whole white alabastrum(diploid) 3	1.234
	CNS0095597	Whole white alabastrum(diploid) 4	0.876
	CNS0095598	Silvery flower (diploied) 1	1.269
	CNS0095599	Silvery flower (diploied) 2	0.289
	CNS0095600	Silvery flower (diploied) 3	0.594
	CNS0095601	Golden flower (diploid) 1	1.084
	CNS0095602	Golden flower (diploid) 2	0.316
	CNS0095603	Golden flower (diploid) 3	0.085
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.059
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.916
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.592
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.131
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.118
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.533
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.119
	CNS0095612	Silvery flower (tetraploid) 3	0.085
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.074
	CRR073298	Stem 2	2.505
	CRR073299	Stem 3	5.685
	CRR073300	Leaf 1	0.781
	CRR073301	Leaf 2	1.136
	CRR073302	Leaf 3	1.006
	CRR073303	Juvenile bud 1	0.073
	CRR073304	Juvenile bud 2	0.030
	CRR073305	Juvenile bud 3	0.073
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.106
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.005
	CRR073311	Second white 3	0.007
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.140
	CRR073316	Gold flowering 2	1.392
	CRR073317	Gold flowering 3	0.299
	CRR073318	Tawny withering 1	38.216
	CRR073319	Tawny withering 2	25.056
	CRR073320	Tawny withering 3	67.049