Gene detail

Detail information of GWHGAAZE026807

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009611307.1	5.7194E-111	PREDICTED: transcription factor bHLH30-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9S7Y1\|BH030_ARATH	4E-33	Transcription factor bHLH30
trEMBL	tr\|M1BTP9\|M1BTP9_SOLTU	4E-111	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400052622}
TAIR10	AT1G68810.1	1E-27	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	10320052	10321926	+
GWHAAZE00000008	mRNA	10320052	10321926	+
GWHAAZE00000008	exon	10320052	10320546	+
GWHAAZE00000008	exon	10321432	10321926	+
GWHAAZE00000008	five_prime_UTR	10320052	10320273	+
GWHAAZE00000008	CDS	10320274	10320546	+
GWHAAZE00000008	CDS	10321432	10321926	+

Transcript Sequence
>GWHTAAZE026841 AAAGCAATCCCTTTTTCCCTCTCTCTTATCACTCCACAACAAACTCTTATTCTTTTCTTTCTCGCCTTTTGCTATATACCCTCAATTCTGCAACTGGGTTACTCGTAATTTCCCATAATCTCAATTACTAACGTGAGCAATCCCAGTACAAGAATTCCTAAAACTAACAAATGTTAACAACGTAATCCAGCTTTTTCTATTGAAATTTCTTCGGACAGAGATATGGAATTCTCGAATTCCTTAGACGGATTCTCGGATAATTACGGGTTCCCCCATGGAATAATGGGAGGTGGATCGATGTCGTCATCATCTTTAGTGTTGGATAACGAGAGGGGAGAGATAGTGAAGGCTATGGCGAGACCTGGGCAGAAGAGTGTGAAGGCGGAGAAGGTTTTAGCGGCTCTGAGGAACCATAGCGAGGCCGAGAGGCGCCGCAGAGAGAGAATCAATGGTCATCTCACTACTCTGCGCACCTTACTTCCCGGCACTAATAAGATGGATAAAGCTTCCTTACTTACCGAAGTTATCAACCGCTTGAAAGAACTGAGGAGGAGTGCATCAGAAGCTACTAAAAGTATTCTCGTACCGATGGACATTGATGAAGTTAAAGTCGAACAACAAGAGGATAATTCAGATGGAGCTTCTTATTCCATAAAGGCATCTCTATGTTGCGAGTATAAACAAGAAGTTCTTTCCGATTTAAGGCAGTCACTTGATACCCTCCATTTAAAAACAGTGAATGAAGAGATTGCAACACTGGGAAGTAGAATGATGAATCTTTTTGTTATAACCGGCTGCAAAGAAGGGAACATAAAAGATACCGAAGGTTGTCAGATTCTTGCAAATTCTGTTCGTCAGGCCCTTAGATCTGTACTCGATAAATTTTATGCTTCAGAGGAGTTTTCTGCAAGCAATTCTCTTTCTAACAAGAGGCGAAGAGTTTCTTTTTTCAATTCTTCGAGCTCGTCTTCGTTAGGAGATATATGGTGA

Network for GWHGAAZE026807

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	63	108	2.90E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.515
	SRR3591706	second leaf	3.537
	SRR3591707	mature leaf	2.079
	SRR3591708	Shoot apex	6.874
	SRR3591709	Stem	3.741
	SRR3591710	White floral bud	2.241
	SRR3591711	White flower	2.121
	SRR3591712	Green floral bud	4.336
	SRR3591713	Yellow flower	0.377
SRP173429	SRR8316895	Juvenile bud stage	2.448
	SRR8316896	Juvenile bud stage	2.360
	SRR8316897	Juvenile bud stage	0.425
	SRR8316894	Third green stage	1.528
	SRR8316900	Third green stage	5.125
	SRR8316901	Third green stage	4.098
	SRR8316898	Complete white stage	1.082
	SRR8316899	Complete white stage	3.791
	SRR8316903	Complete white stage	1.784
	SRR8316902	Silver flowering stage	0.491
	SRR8316904	Silver flowering stage	0.911
	SRR8316905	Silver flowering stage	0.828
	SRR8316906	Gold flowering stage	0.536
	SRR8316907	Gold flowering stage	0.646
	SRR8316908	Gold flowering stage	1.261
SRP132670	SRR6706286	Control	4.155
	SRR6706287	Light intensity 50%	4.564
	SRR6706288	Light intensity 20%	4.015
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.939
	CNS0095593	Slightly white alabastrum(diploid) 2	3.157
	CNS0095594	Slightly white alabastrum(diploid) 3	4.179
	CNS0095595	Whole white alabastrum(diploid) 2	2.867
	CNS0095596	Whole white alabastrum(diploid) 3	2.135
	CNS0095597	Whole white alabastrum(diploid) 4	2.755
	CNS0095598	Silvery flower (diploied) 1	3.123
	CNS0095599	Silvery flower (diploied) 2	1.798
	CNS0095600	Silvery flower (diploied) 3	2.095
	CNS0095601	Golden flower (diploid) 1	2.919
	CNS0095602	Golden flower (diploid) 2	2.987
	CNS0095603	Golden flower (diploid) 3	2.310
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.315
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.357
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.069
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.709
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.774
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.760
	CNS0095610	Silvery flower (tetraploid) 1	1.199
	CNS0095611	Silvery flower (tetraploid) 2	1.986
	CNS0095612	Silvery flower (tetraploid) 3	0.913
	CNS0095613	Golden flower (tetraploid) 1	0.524
	CNS0095614	Golden flower (tetraploid) 2	1.481
	CNS0095615	Golden flower (tetraploid) 3	0.328
CRA001975	CRR073297	Stem 1	2.218
	CRR073298	Stem 2	4.047
	CRR073299	Stem 3	2.394
	CRR073300	Leaf 1	2.387
	CRR073301	Leaf 2	2.685
	CRR073302	Leaf 3	1.756
	CRR073303	Juvenile bud 1	2.749
	CRR073304	Juvenile bud 2	2.870
	CRR073305	Juvenile bud 3	1.601
	CRR073306	Third green 1	0.211
	CRR073307	Third green 2	0.113
	CRR073308	Third green 3	0.232
	CRR073309	Second white 1	0.040
	CRR073310	Second white 2	0.091
	CRR073311	Second white 3	0.003
	CRR073312	Silver flowering 1	0.133
	CRR073313	Silver flowering 2	0.108
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	3.566
	CRR073316	Gold flowering 2	5.080
	CRR073317	Gold flowering 3	3.129
	CRR073318	Tawny withering 1	4.430
	CRR073319	Tawny withering 2	2.332
	CRR073320	Tawny withering 3	5.897