Gene detail

Detail information of GWHGAAZE026792

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO63371.1	5.7172E-132	hypothetical protein CISIN_1g0039192mg, partial [Citrus sinensis]
COG	YP_828710.1	6E-24	serine/threonine protein kinase
Swissprot	tr\|Q05609\|CTR1_ARATH	2E-59	Serine/threonine-protein kinase CTR1
trEMBL	tr\|A0A067FIU2\|A0A067FIU2_CITSI	2E-132	Uncharacterized protein {ECO:0000313\|EMBL:KDO63372.1} (Fragment)
TAIR10	AT2G31010.2	3E-102	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	10137739	10140596	+
GWHAAZE00000008	mRNA	10137739	10140596	+
GWHAAZE00000008	exon	10137739	10137783	+
GWHAAZE00000008	exon	10137991	10138114	+
GWHAAZE00000008	exon	10138541	10138732	+
GWHAAZE00000008	exon	10138795	10139031	+
GWHAAZE00000008	exon	10139338	10139626	+
GWHAAZE00000008	exon	10139764	10139836	+
GWHAAZE00000008	exon	10140511	10140596	+
GWHAAZE00000008	five_prime_UTR	10137739	10137783	+
GWHAAZE00000008	five_prime_UTR	10137991	10138114	+
GWHAAZE00000008	five_prime_UTR	10138541	10138732	+
GWHAAZE00000008	five_prime_UTR	10138795	10138843	+
GWHAAZE00000008	CDS	10138844	10139031	+
GWHAAZE00000008	CDS	10139338	10139626	+
GWHAAZE00000008	CDS	10139764	10139836	+
GWHAAZE00000008	CDS	10140511	10140596	+

Transcript Sequence
>GWHTAAZE026826 ATATTGATTACTCAGAAATAACTGTTGGCACTCGCGTTGGAATCGGATTTTTCGGAGAAGTTTTTCGAGGCATTTGGAATGGAACAGATGTTGCGATCAAGGTATTTCTGGAGCAGGATCTGACTGCTGAAAACATGGAGGATTTCTGCAATGAAATATCCATTCTTAGCCGCCTTCGACATCCAAATGGTATTCATCCTCACTTCTATTCGTATTATTCGTCTTACTCTGATTTTTATATTTAGAAGGTTGCTCCATTAAATTGTTAGTACAAGACAATCTAGAGCAGCTGCTTCTGAGGTTGCTTTGGAAACTCAAGTTTCCTTTGTTCATTTGAATGCACATATGCCTAAAATCAAGGGAGAAGGAACAAACTGATTTGAGTAATAAATATCTTTATTGGTTATTGTATGGCCAATCCAACTTATGCTATTCTTTCAGTTATATTATTTCTTGGAGCATGCACAAAGCCTCCACGCTTATCAATGATTACCGAATACATGGAGATGGGTTCGTTATATTATTTGATCCATTTAAGTGGTCAGAAGAAGAAACTCAGCTGGCGGAGGAGGCTTAAAATGCTGCGGGATATATGCAGGGGGCTCATGTGCATACACCGGATGAAGATTGTCCATCGTGATCTAAAGAGTGCCAACTGCCTAGTGAATAAGCACTGGACGGTTAAGATATGTGATTTCGGGCTATCGAGAATGATGACAGAGGCACCCATGAGAGACTCCTCATCAGCAGGCACTCCAGAATGGATGGCCCCTGAACTTATTCGTAATGAACCCTTCACAGAGAAATGCGATATTTTCAGCCTTGGGGTTATCATGTGGGAGCTCTACACTCTAAATAGGCCTTGGTTTGGCGTACCACCAGAGCGGGTTGTTTATGCTGTCGCTAATGAGGGGTCGCGGTTGGAGATCCCTGAAGGTCCCTTGGGCAGGCTGATTGCAGATTGTTGGGCAGAACCACCACCGGAGCGACCAAGCTGTGAGGATATTCTTACTCGTTTGCTAGATTGCGAGTATTCGCTCTCCTAA

Network for GWHGAAZE026792

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	10	203	1.50E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL_CTR1-DRK-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.489
	SRR3591706	second leaf	34.989
	SRR3591707	mature leaf	28.223
	SRR3591708	Shoot apex	48.816
	SRR3591709	Stem	57.749
	SRR3591710	White floral bud	23.166
	SRR3591711	White flower	32.918
	SRR3591712	Green floral bud	32.203
	SRR3591713	Yellow flower	29.167
SRP173429	SRR8316895	Juvenile bud stage	24.318
	SRR8316896	Juvenile bud stage	31.881
	SRR8316897	Juvenile bud stage	16.118
	SRR8316894	Third green stage	14.701
	SRR8316900	Third green stage	41.842
	SRR8316901	Third green stage	49.724
	SRR8316898	Complete white stage	15.955
	SRR8316899	Complete white stage	55.154
	SRR8316903	Complete white stage	23.527
	SRR8316902	Silver flowering stage	11.802
	SRR8316904	Silver flowering stage	16.812
	SRR8316905	Silver flowering stage	7.223
	SRR8316906	Gold flowering stage	22.205
	SRR8316907	Gold flowering stage	19.551
	SRR8316908	Gold flowering stage	27.078
SRP132670	SRR6706286	Control	31.126
	SRR6706287	Light intensity 50%	32.769
	SRR6706288	Light intensity 20%	35.932
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	54.871
	CNS0095593	Slightly white alabastrum(diploid) 2	72.777
	CNS0095594	Slightly white alabastrum(diploid) 3	54.299
	CNS0095595	Whole white alabastrum(diploid) 2	46.736
	CNS0095596	Whole white alabastrum(diploid) 3	43.807
	CNS0095597	Whole white alabastrum(diploid) 4	48.298
	CNS0095598	Silvery flower (diploied) 1	52.397
	CNS0095599	Silvery flower (diploied) 2	39.030
	CNS0095600	Silvery flower (diploied) 3	29.217
	CNS0095601	Golden flower (diploid) 1	32.983
	CNS0095602	Golden flower (diploid) 2	24.438
	CNS0095603	Golden flower (diploid) 3	26.294
	CNS0095604	Slightly white alabastrum(tetraploid) 1	51.457
	CNS0095605	Slightly white alabastrum(tetraploid) 2	48.551
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.205
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.676
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.131
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.430
	CNS0095610	Silvery flower (tetraploid) 1	46.320
	CNS0095611	Silvery flower (tetraploid) 2	39.968
	CNS0095612	Silvery flower (tetraploid) 3	36.500
	CNS0095613	Golden flower (tetraploid) 1	31.598
	CNS0095614	Golden flower (tetraploid) 2	37.357
	CNS0095615	Golden flower (tetraploid) 3	17.969
CRA001975	CRR073297	Stem 1	28.093
	CRR073298	Stem 2	22.273
	CRR073299	Stem 3	17.921
	CRR073300	Leaf 1	33.617
	CRR073301	Leaf 2	35.310
	CRR073302	Leaf 3	21.882
	CRR073303	Juvenile bud 1	33.678
	CRR073304	Juvenile bud 2	20.894
	CRR073305	Juvenile bud 3	33.251
	CRR073306	Third green 1	10.131
	CRR073307	Third green 2	10.993
	CRR073308	Third green 3	10.653
	CRR073309	Second white 1	4.841
	CRR073310	Second white 2	8.112
	CRR073311	Second white 3	6.180
	CRR073312	Silver flowering 1	2.236
	CRR073313	Silver flowering 2	2.925
	CRR073314	Silver flowering 3	2.286
	CRR073315	Gold flowering 1	9.844
	CRR073316	Gold flowering 2	17.189
	CRR073317	Gold flowering 3	5.875
	CRR073318	Tawny withering 1	26.761
	CRR073319	Tawny withering 2	31.747
	CRR073320	Tawny withering 3	25.279