Gene detail

Detail information of GWHGAAZE026778

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281166.1	0	PREDICTED: serine/threonine-protein kinase CDL1 [Vitis vinifera]
COG	YP_001958461.1	3E-35	hypothetical protein Aasi_1443
Swissprot	tr\|Q0WRY5\|CDL1_ARATH	2E-105	Serine/threonine-protein kinase CDL1 {ECO:0000305}
trEMBL	tr\|E0CTT3\|E0CTT3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21999.3}
TAIR10	AT3G58690.1	2E-168	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	10017683	10021691	-
GWHAAZE00000008	mRNA	10017683	10021691	-
GWHAAZE00000008	exon	10021535	10021691	-
GWHAAZE00000008	exon	10020355	10020596	-
GWHAAZE00000008	exon	10020109	10020244	-
GWHAAZE00000008	exon	10019152	10019413	-
GWHAAZE00000008	exon	10018927	10019059	-
GWHAAZE00000008	exon	10017683	10018169	-
GWHAAZE00000008	CDS	10021535	10021691	-
GWHAAZE00000008	CDS	10020355	10020596	-
GWHAAZE00000008	CDS	10020109	10020244	-
GWHAAZE00000008	CDS	10019152	10019413	-
GWHAAZE00000008	CDS	10018927	10019059	-
GWHAAZE00000008	CDS	10017918	10018169	-
GWHAAZE00000008	three_prime_UTR	10017683	10017917	-

Transcript Sequence
>GWHTAAZE026812 ATGGAACCAGAAGAAGTAGATTACAAGAGGAAGGAGCGAGTAGCTTTGATAACAATACTTGTGCTCGCCGGCCTCGCCGTCGCTTCATTGCTCGTCGCCGTCGCCTACTACTTTTACATACGCCACAAAGTCTCAAAGCGCTCAAAGTACCGCCAAAGGGTTGATAACGATGATAAAGGTAGTAGTTTTGCGAATATTCAAGTTGCCACTGAGAAAGGACTTCAGATCTTCACCTTCAAGCAGCTACATTCTGCCACTGGTGGTTTTGGTAAATCAAATGTGATTGGACATGGTGGGTTTGGGTTGGTGTACCGAGGAGTTCTTCAAGATGGGAGGAAGGCTGCAGTGAAATTGATGGATCGGGTTGGAAAACAGGGAGAGGAGGAATTTAAAGTAGAGGTGGAATTGCTGAGTAGGCTACATTCACCATATTTGCTAGCGTTGATTGGCTACTGTTCAGAAAGTAACCACAAATTGTTGGTTTACGAGTTTATGTCAAAAGGTGGTCTTCAGGAACATTTGTATCCCATTAGTGGTACTTCTAGTGCTGTTAATTCAAAATTGGATTGGGAAACCCGGATGAGAATAGCTTTGGAAGCAGCAAAAGGTTTAGAATATCTCCATGAACATGTTAGACCACCGGTGATTCACAGGGATTTTAAGAGCAGCAATATCCTGTTGGACAAAAATTTCCATGCCAAAGTTTCCGACTTTGGACTGGCCAAGCTTGGATCTGACAAAGCTGGTGGGCATGTTTCCACCCGAGTGTTGGGCACCCAGGGTTATGTTGCTCCTGAGTATGCGTTAACAGGACATCTTACTACAAAATCAGATGTGTATAGTTACGGAGTTGTCCTTTTGGAGTTGCTTACGGGCAGAGTTCCAGTCGACATGAAAAGAGCCCCTGGGGAGGGCGTTCTTGTATCTTGGGCTTTGCCTCGGCTCACTGATAGAGAGAAGGTCGTAGAGATTATGGATCCGGCATTGGAGGGTCAGTACTCAATGAAGGATGTTATTCAAGTTGCTGCTATTGCTATAATGTGTGTGCAACCAGAGGCTGATTATAGACCATTAATGGCAGATGTGGTGCAGTCACTAGTCCCGCTGGTCAAACTTCAGAGGCCAAATTCTAAGGTAGGCGGATCCTCTAGCTTCCATGCTACCCAGTCACCTAAGGCATAGAACTGTATATGCGAAAGCGTGAGGGATTTAACTGTCTTAGAATTATATTAGTTCATGCGTGTCTCTCTAAGGTAATTGTTAACCTAAGGTCAATAACATGTATTTATATAATTGAACTGCGAAAAACTTCAAGGATGATCTACTTTATTTGTACCATGTACCTCTAAGTTAGAAAAAATTTGCCACAACCATTTGCGGTTAGCCTATTGCAAGTATTTTCAGTTCTAGTGTTAAG

Network for GWHGAAZE026778

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	91	300	4.70E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_Extensin

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.491
	SRR3591706	second leaf	2.286
	SRR3591707	mature leaf	0.861
	SRR3591708	Shoot apex	29.724
	SRR3591709	Stem	25.732
	SRR3591710	White floral bud	6.797
	SRR3591711	White flower	7.099
	SRR3591712	Green floral bud	5.715
	SRR3591713	Yellow flower	0.406
SRP173429	SRR8316895	Juvenile bud stage	11.017
	SRR8316896	Juvenile bud stage	14.415
	SRR8316897	Juvenile bud stage	7.383
	SRR8316894	Third green stage	4.830
	SRR8316900	Third green stage	11.255
	SRR8316901	Third green stage	10.351
	SRR8316898	Complete white stage	1.630
	SRR8316899	Complete white stage	12.369
	SRR8316903	Complete white stage	4.853
	SRR8316902	Silver flowering stage	1.172
	SRR8316904	Silver flowering stage	0.678
	SRR8316905	Silver flowering stage	0.380
	SRR8316906	Gold flowering stage	1.315
	SRR8316907	Gold flowering stage	0.468
	SRR8316908	Gold flowering stage	1.299
SRP132670	SRR6706286	Control	9.276
	SRR6706287	Light intensity 50%	8.980
	SRR6706288	Light intensity 20%	9.891
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.969
	CNS0095593	Slightly white alabastrum(diploid) 2	9.411
	CNS0095594	Slightly white alabastrum(diploid) 3	10.492
	CNS0095595	Whole white alabastrum(diploid) 2	9.923
	CNS0095596	Whole white alabastrum(diploid) 3	5.434
	CNS0095597	Whole white alabastrum(diploid) 4	7.291
	CNS0095598	Silvery flower (diploied) 1	16.955
	CNS0095599	Silvery flower (diploied) 2	15.224
	CNS0095600	Silvery flower (diploied) 3	4.193
	CNS0095601	Golden flower (diploid) 1	23.616
	CNS0095602	Golden flower (diploid) 2	10.627
	CNS0095603	Golden flower (diploid) 3	9.424
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.745
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.882
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.235
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.466
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.433
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.943
	CNS0095610	Silvery flower (tetraploid) 1	1.460
	CNS0095611	Silvery flower (tetraploid) 2	7.383
	CNS0095612	Silvery flower (tetraploid) 3	1.515
	CNS0095613	Golden flower (tetraploid) 1	0.416
	CNS0095614	Golden flower (tetraploid) 2	0.979
	CNS0095615	Golden flower (tetraploid) 3	0.091
CRA001975	CRR073297	Stem 1	20.656
	CRR073298	Stem 2	19.454
	CRR073299	Stem 3	18.754
	CRR073300	Leaf 1	13.071
	CRR073301	Leaf 2	12.674
	CRR073302	Leaf 3	15.892
	CRR073303	Juvenile bud 1	11.594
	CRR073304	Juvenile bud 2	11.888
	CRR073305	Juvenile bud 3	12.287
	CRR073306	Third green 1	0.275
	CRR073307	Third green 2	0.111
	CRR073308	Third green 3	0.201
	CRR073309	Second white 1	0.255
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.261
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.205
	CRR073316	Gold flowering 2	1.537
	CRR073317	Gold flowering 3	1.916
	CRR073318	Tawny withering 1	20.060
	CRR073319	Tawny withering 2	14.584
	CRR073320	Tawny withering 3	20.918