Gene detail

Detail information of GWHGAAZE026771

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082978.1	0	PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [Sesamum indicum]
COG	YP_004625437.1	3E-88	alpha,alpha-trehalose-phosphate synthase
Swissprot	tr\|Q9LMI0\|TPS7_ARATH	0	Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
trEMBL	tr\|A0A022QS58\|A0A022QS58_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU30761.1}
TAIR10	AT1G06410.1	0	trehalose-phosphatase/synthase 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	9945355	9947801	-
GWHAAZE00000008	mRNA	9945355	9947801	-
GWHAAZE00000008	exon	9945355	9945360	-
GWHAAZE00000008	exon	9945963	9947801	-
GWHAAZE00000008	CDS	9945963	9947801	-
GWHAAZE00000008	CDS	9945355	9945360	-

Transcript Sequence
>GWHTAAZE026805 ATGATGTCCAGATCGTATACCAATCTTTTAGATTTAGCTTCTGGGAACTTTCCAGTAATGGGCCGGGAGCGGAGGCGTATGTCTAGGGTAATGACGGTTCCTGGTAGTATTGCCGAGCTTGATGATGACCAGACTCATAGTGTTTCCTCTGATAACCTATCTGCACTTGGTTCAGATAGGATGATTATTGTGGCAAATCAATTGCCCTTGAAAGTGAAGAGAAGACCTGATAATAAGGGATGGAGCTTTAGTTGGGATGAGGACTCCTTGCTTTTGCGACTTAAGGATGGTTTTCCTGAAGAAATGGAGGTGCAATATGTTGGGTCGTTGAGCGTTGATGTTGATCCGATTGAACAAGATGACGTAGCTCAACTTCTGCTGGAGAAATTTAGATGCGTGCCTACTTTCCTTCCTCCTAATCTTTTGGAGAAATTCTATGATAGCTTTTGCAAGAAGCAATTGTGGACTCTTTTTCACTACATGCTGCCGTTTTCAGCTGATCATGGAGGCCGGTTTGATCGTTCAGCGTGGGAAGCCTATGTGTCTGCAAATAAGTTGTTTTCTCAGAAAGTGATTGAGGTGCTGAATCCTGATGATGATTTTGTTTGGATTCATGATTATCATTTGATGGTTTTGCCCACCTTCTTGAGGAGGCGGTTCAACCGTTTGAGAATGGGTTTTTTTCTTCACAGCCCATTTCCGTCATCAGAGATTTACAGGACACTTCCAGTTAGAGAAGAAATCCTGAAGGCTCTACTCAACTCTGATCTTATCGGTTTCCACACCTTCGATTATGCTAGACATTTCCTTTCTTGCTGCAGTCGAATGTTGGGCTTGGAATATGTATCAAAGAGGGGCTATATTGGGTTAGACTATTTTGGAAGGACTGTTGGGATAAAGATTATGCCGGTTGGTATTCACATGGGTCAGATTGAATCCGTGATGAAACTAGCGGATAAAGAGTGGAGGGTTGGGGAACTCAAGCAGCAGTTCGAAGGGAAAACTGTGTTACTTGGAGTTGATGACATGGACATCTTCAAAGGTATCAACTTGAAACTTTTAGCAATGGAAAAGATGCTCAAGCACCACCCGACCTGGCAAGGAAGGGCTGTGCTGGTCCAGATTGCAAATCCTGCAAGAGGTAAAGGGATAGATTTAGAGGAAATACAAGCTGAAATACAAGAAAGCTGTAAGAGAATCAATCAGAAGTATGGTAAGCCTGGATATCAACCTATAGTCTTTATTGACAAGCCTTTGTCACTCTGTGAAAGGATTGCCTATTACAGCATAGCGGAGTGTGTTGTAGTCACAGCAGTTAGGGATGGAATGAACCTGACCCCATATGAATATATCGTTTGTAGACAGGGAATAACGGGTGCAGAAACGGGATCTGATTTGATGGGGCCTAAGAAAAGCATGATAGTTGTATCGGAATTTATCGGGTGTTCTCCTTCACTGAGTGGAGCAATCCGTGTAAACCCATGGAACGTTGAAGCGACTGCAGAGGCAATGAATGAGGCTATATCAATGGCTGAAACAGAGAAACAATTACGACATGAAAAACATTATCGTTATGTTAGCACCCATGATGTAGCTTATTGGTCACGCAGTTTCTTGCAAGATATGGAGAGAACTTGTGTGGATCATTTTAGGAAAAGATGTTGGGGCATTGGGTTGGGCTTTGGGTTCAGAGTTGTGGCGCTTGATCCTAATTTTAGAAAGCTTTCGATAGACAATATTGTGTCAGCTTACATCAAGGCTAAGAAAAGGGCCATATTGTTGGACTACGATGGCACTGTGATGCCCCAAAATTCCATCATTAAGACGCCTAGTGCAGAGGTGTAA

Network for GWHGAAZE026771

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00982.22	Glyco_transf_20	60	543	9.10E-179

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16055	TPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	biological_process	trehalose biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.229
	SRR3591706	second leaf	9.974
	SRR3591707	mature leaf	11.583
	SRR3591708	Shoot apex	9.040
	SRR3591709	Stem	12.265
	SRR3591710	White floral bud	25.130
	SRR3591711	White flower	26.486
	SRR3591712	Green floral bud	17.147
	SRR3591713	Yellow flower	24.236
SRP173429	SRR8316895	Juvenile bud stage	7.180
	SRR8316896	Juvenile bud stage	10.805
	SRR8316897	Juvenile bud stage	4.509
	SRR8316894	Third green stage	6.157
	SRR8316900	Third green stage	15.737
	SRR8316901	Third green stage	15.311
	SRR8316898	Complete white stage	8.330
	SRR8316899	Complete white stage	18.417
	SRR8316903	Complete white stage	15.569
	SRR8316902	Silver flowering stage	10.479
	SRR8316904	Silver flowering stage	18.896
	SRR8316905	Silver flowering stage	7.362
	SRR8316906	Gold flowering stage	24.733
	SRR8316907	Gold flowering stage	19.786
	SRR8316908	Gold flowering stage	22.139
SRP132670	SRR6706286	Control	18.781
	SRR6706287	Light intensity 50%	19.952
	SRR6706288	Light intensity 20%	19.542
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.154
	CNS0095593	Slightly white alabastrum(diploid) 2	2.585
	CNS0095594	Slightly white alabastrum(diploid) 3	3.962
	CNS0095595	Whole white alabastrum(diploid) 2	4.498
	CNS0095596	Whole white alabastrum(diploid) 3	4.645
	CNS0095597	Whole white alabastrum(diploid) 4	4.947
	CNS0095598	Silvery flower (diploied) 1	5.473
	CNS0095599	Silvery flower (diploied) 2	3.902
	CNS0095600	Silvery flower (diploied) 3	27.284
	CNS0095601	Golden flower (diploid) 1	4.858
	CNS0095602	Golden flower (diploid) 2	22.365
	CNS0095603	Golden flower (diploid) 3	21.546
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.944
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.964
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.550
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.180
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.937
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.212
	CNS0095610	Silvery flower (tetraploid) 1	28.135
	CNS0095611	Silvery flower (tetraploid) 2	24.989
	CNS0095612	Silvery flower (tetraploid) 3	20.211
	CNS0095613	Golden flower (tetraploid) 1	10.271
	CNS0095614	Golden flower (tetraploid) 2	22.295
	CNS0095615	Golden flower (tetraploid) 3	32.337
CRA001975	CRR073297	Stem 1	12.598
	CRR073298	Stem 2	13.437
	CRR073299	Stem 3	12.913
	CRR073300	Leaf 1	15.443
	CRR073301	Leaf 2	11.769
	CRR073302	Leaf 3	10.928
	CRR073303	Juvenile bud 1	9.334
	CRR073304	Juvenile bud 2	10.999
	CRR073305	Juvenile bud 3	13.859
	CRR073306	Third green 1	17.828
	CRR073307	Third green 2	12.404
	CRR073308	Third green 3	16.959
	CRR073309	Second white 1	10.565
	CRR073310	Second white 2	16.012
	CRR073311	Second white 3	17.222
	CRR073312	Silver flowering 1	12.042
	CRR073313	Silver flowering 2	7.195
	CRR073314	Silver flowering 3	11.813
	CRR073315	Gold flowering 1	5.205
	CRR073316	Gold flowering 2	10.465
	CRR073317	Gold flowering 3	8.608
	CRR073318	Tawny withering 1	5.448
	CRR073319	Tawny withering 2	4.148
	CRR073320	Tawny withering 3	5.418