Gene detail

Detail information of GWHGAAZE026743

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009774409.1	0	PREDICTED: leukotriene A-4 hydrolase homolog isoform X1 [Nicotiana sylvestris]
COG	YP_633291.1	6E-137	M1 family peptidase
Swissprot	tr\|Q9FY49\|LKHA4_ARATH	0	Leukotriene A-4 hydrolase homolog
trEMBL	tr\|A0A022RJ70\|A0A022RJ70_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU39803.1}
TAIR10	AT5G13520.1	0	peptidase M1 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	9436653	9441774	+
GWHAAZE00000008	mRNA	9436653	9441774	+
GWHAAZE00000008	exon	9436653	9436908	+
GWHAAZE00000008	exon	9437519	9438115	+
GWHAAZE00000008	exon	9438820	9439053	+
GWHAAZE00000008	exon	9439149	9439475	+
GWHAAZE00000008	exon	9441478	9441774	+
GWHAAZE00000008	five_prime_UTR	9436653	9436908	+
GWHAAZE00000008	five_prime_UTR	9437519	9437623	+
GWHAAZE00000008	CDS	9437624	9438115	+
GWHAAZE00000008	CDS	9438820	9439053	+
GWHAAZE00000008	CDS	9439149	9439475	+
GWHAAZE00000008	CDS	9441478	9441774	+

Transcript Sequence
>GWHTAAZE026777 CTTTCTCTAAACCTCACACCGGCCATCTTTTGACACTCGGTCTCTCTCAATCTCATCCGTCATCGATCCCTCACCAACACGCCTATCCCTTTCTCTCTCCGAGATTGACCCCGTCAAGGGCCAGTTCCTCACTATTTCTCTCTCTAACCTTTCCAAGTTCTTAATTGTTTTCTCCACTTCCCCCTCTAGCTCCGCCCTTCAATGGCTCTTGCCGCCTCAGACCTTCAACAAGTCCTTCCCCTTCGTCTACACGCAGTGCCAATCGATCCACGCCAGGTCAATTTTCCCTTGCCAGGACACCCCGGCTGCTAGGATTTGCTACTCAGCTCGGCTCAACATCCCGCGCCAGCTGTCCGCTGTGATGTCAGCGCGGCATGTGGAGAGAAGGCCACCAGTGGCGGCCGAGGCTGGGCCGGTGTGTGATGACTCTGCTTGGTGTGCTGAAGGGAGGGTGGTTGAGGAGTTTGTGATGGAGCAACCAATTCCGCCGTACTTGTTTGCCTTTGCTGTGGGGGAAATTGGGTATAGAGAGGTGGGGCCAAGGACTAGGGTTTATGCAGAGTCTGTGCCGGCGGTGTTGGATTCAGCGGCGAGTGAGTTTGCAGGGACTGAGGATATGATTAGGGTTGGGGAGAGGTTGTTTGGGCCGTACGATTGGGAGAGGTTTGATTTGTTGGTGCTGCCGCCAAGCTTTCCTTACGGAGGAATGGAGAATCCGAGGATGGTGTTTTTGACCCCTACTGTGATTAAAGGGGATGCAAGTGGAGCACAGGTGGTGGCGCATGAGCTAGCTCATAGCTGGACTGGGAATTTGATCACTAACAAAACCAATGAACACTTTTGGTTGAATGAGGGTTTTACAACATATGCAGAACGGAGAATTGTCGAGGCTGTCCAAGGGGAGGACATAGCTGCTCTAAATATTGGAATTGGTTGGAAGGGTTTAAATGAGGATGTGGAGAGGTTCAAGGACAACATGGAGTTCACTAAGCTCAAAACCAACCAGGATGGAGTTGACCCTGATGATGTGTATTCCCAAGTCCCATACGAAAAGGGTTTTCAGTTTTTGTGGCGCATTGAACGGCAGATTGGAAGACCTGCATTTGATGAATTCCTTAAGAAGTATATTGCGACTTTTAAGTTCCAGTCGATTGACACTGATATGTTTATAAATTTCCTAAAAGCGAATGTCCCTGGAATAGAGAATGATATTGACTTGATACTGTGGACTGAGGGTGTTGGTATCCCATCAGATGCCATGGAGCCAGTTTCAAACCTTTATACAAAAATTATTTCACTGGCACGTGAATTCAGTCTTGGTAGGATGCCAAGGGAGGATGAAGTTGCTGACTGGAAAGGACAGGAATGGGAGCTTTACCTGGAAAATCTTCCCAAATCTGTTGAAGCTTCACAGATTTCAGCCCTGGATGTTCGGTACAGGCTAGGAGAAACAAAAGATTATGAGGTGAAGGTAGCGTTTCTCCAACTGGCCATCTCGTCAAAGTGCAGAGACTACTATGGTGAGGTGGAGAGAACCCTAAAGGAAGTTGGGAGGATGAAGTATCTTCGCCCCCTCTACACTGCCCTCGTTCAAGGATCTGGTAAGGAAGAAGAGAAAATCTTTGCCAAAAGGGTCTTCTCAGAGGCTCGTGATACTTATCACCCCATCGCTCAAAGTGTTGTTGAGTCCATCCTCGCCAAGTATGTGTAA

Network for GWHGAAZE026743

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01433.21	Peptidase_M1	89	276	6.00E-42
PF09127.12	Leuk-A4-hydro_C	331	445	3.00E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01254	LTA4H	Metabolic pathways	map01100
K01254	LTA4H	Arachidonic acid metabolism	map00590

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008237	molecular_function	metallopeptidase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.999
	SRR3591706	second leaf	11.729
	SRR3591707	mature leaf	8.535
	SRR3591708	Shoot apex	32.114
	SRR3591709	Stem	21.927
	SRR3591710	White floral bud	25.396
	SRR3591711	White flower	28.758
	SRR3591712	Green floral bud	26.460
	SRR3591713	Yellow flower	17.550
SRP173429	SRR8316895	Juvenile bud stage	18.885
	SRR8316896	Juvenile bud stage	27.284
	SRR8316897	Juvenile bud stage	11.184
	SRR8316894	Third green stage	9.986
	SRR8316900	Third green stage	23.962
	SRR8316901	Third green stage	23.821
	SRR8316898	Complete white stage	4.866
	SRR8316899	Complete white stage	26.851
	SRR8316903	Complete white stage	13.910
	SRR8316902	Silver flowering stage	6.697
	SRR8316904	Silver flowering stage	7.736
	SRR8316905	Silver flowering stage	3.426
	SRR8316906	Gold flowering stage	11.425
	SRR8316907	Gold flowering stage	12.496
	SRR8316908	Gold flowering stage	14.999
SRP132670	SRR6706286	Control	24.907
	SRR6706287	Light intensity 50%	25.926
	SRR6706288	Light intensity 20%	26.748
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.882
	CNS0095593	Slightly white alabastrum(diploid) 2	27.390
	CNS0095594	Slightly white alabastrum(diploid) 3	21.850
	CNS0095595	Whole white alabastrum(diploid) 2	21.657
	CNS0095596	Whole white alabastrum(diploid) 3	18.711
	CNS0095597	Whole white alabastrum(diploid) 4	18.997
	CNS0095598	Silvery flower (diploied) 1	25.564
	CNS0095599	Silvery flower (diploied) 2	23.093
	CNS0095600	Silvery flower (diploied) 3	21.582
	CNS0095601	Golden flower (diploid) 1	22.464
	CNS0095602	Golden flower (diploid) 2	22.243
	CNS0095603	Golden flower (diploid) 3	23.933
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.778
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.427
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.531
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.401
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.891
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.938
	CNS0095610	Silvery flower (tetraploid) 1	24.748
	CNS0095611	Silvery flower (tetraploid) 2	30.896
	CNS0095612	Silvery flower (tetraploid) 3	19.949
	CNS0095613	Golden flower (tetraploid) 1	18.327
	CNS0095614	Golden flower (tetraploid) 2	23.743
	CNS0095615	Golden flower (tetraploid) 3	14.148
CRA001975	CRR073297	Stem 1	29.270
	CRR073298	Stem 2	25.173
	CRR073299	Stem 3	28.379
	CRR073300	Leaf 1	26.250
	CRR073301	Leaf 2	25.535
	CRR073302	Leaf 3	18.205
	CRR073303	Juvenile bud 1	26.517
	CRR073304	Juvenile bud 2	13.702
	CRR073305	Juvenile bud 3	32.607
	CRR073306	Third green 1	7.209
	CRR073307	Third green 2	7.207
	CRR073308	Third green 3	7.101
	CRR073309	Second white 1	10.151
	CRR073310	Second white 2	8.114
	CRR073311	Second white 3	8.515
	CRR073312	Silver flowering 1	6.620
	CRR073313	Silver flowering 2	9.590
	CRR073314	Silver flowering 3	8.691
	CRR073315	Gold flowering 1	9.186
	CRR073316	Gold flowering 2	9.334
	CRR073317	Gold flowering 3	9.704
	CRR073318	Tawny withering 1	22.071
	CRR073319	Tawny withering 2	24.225
	CRR073320	Tawny withering 3	20.405