Gene detail

Detail information of GWHGAAZE026740

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP04335.1	9.5231E-99	unnamed protein product [Coffea canephora]
COG	YP_004050330.1	0.000000004	two component sigma-54 specific transcriptional regulator
Swissprot	tr\|Q10N34\|PRR73_ORYSJ	4E-69	Two-component response regulator-like PRR73
trEMBL	tr\|A0A068U724\|A0A068U724_COFCA	4E-99	Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313\|EMBL:CDP04335.1}
TAIR10	AT5G02810.1	2E-50	pseudo-response regulator 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	9376360	9385564	-
GWHAAZE00000008	mRNA	9376360	9385564	-
GWHAAZE00000008	exon	9385354	9385564	-
GWHAAZE00000008	exon	9384802	9384881	-
GWHAAZE00000008	exon	9384470	9384679	-
GWHAAZE00000008	exon	9376804	9376965	-
GWHAAZE00000008	exon	9376360	9376617	-
GWHAAZE00000008	CDS	9385354	9385564	-
GWHAAZE00000008	CDS	9384802	9384881	-
GWHAAZE00000008	CDS	9384470	9384679	-
GWHAAZE00000008	CDS	9376804	9376965	-
GWHAAZE00000008	CDS	9376360	9376617	-

Transcript Sequence
>GWHTAAZE026774 ATGAATCCCCACATGTGGGACCACCAGAAGGAGTCTAGGGACCGAGTTGGTGATGGTGATGGGCAGGGGATACTGCAGCAACAGCCTCAAGGGCCGGTGGTTCAGTGGGAACGGTTTCTTCCTCTTCGGTCTCTCAAGGTTCTGGTGGTGGAAAATAACGACTCCACCCGCCATGTCATAACTGCGTTGCTTCAAAATTGTGGCTATGAAGTTGTGGCTTTAACAAACGGTCTAGAAGCGTGGAAAATCTTAGAAGATGCAACCAATCACATTGATCTTCTTTTAACCGAGAGAGCAACATGTTCCCTTGATATTTTAACTTGCCAATACTTTTTAACTAAAATACCTGATGATTTTTTTTGCACAGTGATGTCGTCCAATGATTCCATGGGTATGGTCATCAAATGTTTGTCAAAAGGCGCAGTTGACTTTTTAGTGAAGCCGATCCGAAAGAACGAACTTAAGAACCTGTGGCAGCATGTATGGAGGAAATGCCGAAGTCATAGTGGCAGCGGAAGTGAAAGTGGTATAAGGACTGAAAATCTAATGAAGTCGGAAGGTGTTGAAGGGTCGGAAAATAACGATAGCAGCAATAACGAGAATGACAATGATAGCTTTGGTTTGAACTTTAAGGATGAAAGTGACAATGGAAGTGGGACTCAGAGTTCTTGGTCGAAAAGGATCGGAGAAGTTTATAGGCACCAACATATGTCAATGTCGGACCAATTAGTGGATCCCCATGATAGCACTCGTGTCCAGGTTATCCATTCAAGGCCCGAAGCCATTAGCAGCAATTGGGTGCCTAAGAGTGCAACAAAGGAGTGCTGTGGAGAGGATGAACTTGGTATCCATACCTTTATTTACAATAAAATCACTGTTCCACACTTTCACTTCTCATTGGTCTACACTCTGCACCCTTAG

Network for GWHGAAZE026740

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.25	Response_reg	47	156	2.20E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
K12129	PRR7	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.945
	SRR3591706	second leaf	7.900
	SRR3591707	mature leaf	21.733
	SRR3591708	Shoot apex	3.108
	SRR3591709	Stem	1.495
	SRR3591710	White floral bud	2.438
	SRR3591711	White flower	2.133
	SRR3591712	Green floral bud	0.877
	SRR3591713	Yellow flower	0.459
SRP173429	SRR8316895	Juvenile bud stage	1.002
	SRR8316896	Juvenile bud stage	3.726
	SRR8316897	Juvenile bud stage	8.778
	SRR8316894	Third green stage	2.153
	SRR8316900	Third green stage	5.656
	SRR8316901	Third green stage	8.896
	SRR8316898	Complete white stage	1.752
	SRR8316899	Complete white stage	1.565
	SRR8316903	Complete white stage	3.871
	SRR8316902	Silver flowering stage	5.092
	SRR8316904	Silver flowering stage	3.729
	SRR8316905	Silver flowering stage	2.221
	SRR8316906	Gold flowering stage	8.203
	SRR8316907	Gold flowering stage	3.974
	SRR8316908	Gold flowering stage	20.329
SRP132670	SRR6706286	Control	3.842
	SRR6706287	Light intensity 50%	3.283
	SRR6706288	Light intensity 20%	2.640
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.827
	CNS0095593	Slightly white alabastrum(diploid) 2	2.772
	CNS0095594	Slightly white alabastrum(diploid) 3	2.660
	CNS0095595	Whole white alabastrum(diploid) 2	7.529
	CNS0095596	Whole white alabastrum(diploid) 3	9.191
	CNS0095597	Whole white alabastrum(diploid) 4	5.618
	CNS0095598	Silvery flower (diploied) 1	1.979
	CNS0095599	Silvery flower (diploied) 2	2.481
	CNS0095600	Silvery flower (diploied) 3	5.270
	CNS0095601	Golden flower (diploid) 1	1.994
	CNS0095602	Golden flower (diploid) 2	4.333
	CNS0095603	Golden flower (diploid) 3	3.339
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.823
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.734
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.577
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.288
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.189
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.682
	CNS0095610	Silvery flower (tetraploid) 1	27.289
	CNS0095611	Silvery flower (tetraploid) 2	15.653
	CNS0095612	Silvery flower (tetraploid) 3	0.298
	CNS0095613	Golden flower (tetraploid) 1	10.353
	CNS0095614	Golden flower (tetraploid) 2	19.756
	CNS0095615	Golden flower (tetraploid) 3	16.873
CRA001975	CRR073297	Stem 1	0.570
	CRR073298	Stem 2	0.692
	CRR073299	Stem 3	0.716
	CRR073300	Leaf 1	2.271
	CRR073301	Leaf 2	3.129
	CRR073302	Leaf 3	0.681
	CRR073303	Juvenile bud 1	0.542
	CRR073304	Juvenile bud 2	0.192
	CRR073305	Juvenile bud 3	0.082
	CRR073306	Third green 1	3.051
	CRR073307	Third green 2	1.399
	CRR073308	Third green 3	2.306
	CRR073309	Second white 1	0.597
	CRR073310	Second white 2	2.030
	CRR073311	Second white 3	1.352
	CRR073312	Silver flowering 1	0.128
	CRR073313	Silver flowering 2	0.393
	CRR073314	Silver flowering 3	0.081
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.501
	CRR073317	Gold flowering 3	0.035
	CRR073318	Tawny withering 1	0.293
	CRR073319	Tawny withering 2	0.534
	CRR073320	Tawny withering 3	0.473