Gene detail

Detail information of GWHGAAZE026734

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00008.1	4.723E-113	unnamed protein product [Coffea canephora]
COG	YP_001938945.1	0.00000006	RNA-binding protein (RRM domain)
Swissprot	tr\|Q9FYB7\|RSZ32_ARATH	9E-82	Serine/arginine-rich splicing factor RS2Z32
trEMBL	tr\|A0A068TXB9\|A0A068TXB9_COFCA	2E-113	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDP00008.1}
TAIR10	AT2G37340.1	6E-60	arginine/serine-rich zinc knuckle-containing protein 33

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	9303621	9310064	+
GWHAAZE00000008	mRNA	9303621	9310064	+
GWHAAZE00000008	exon	9303621	9303678	+
GWHAAZE00000008	exon	9307527	9307638	+
GWHAAZE00000008	exon	9308339	9308378	+
GWHAAZE00000008	exon	9308513	9308608	+
GWHAAZE00000008	exon	9308811	9309049	+
GWHAAZE00000008	exon	9309207	9309293	+
GWHAAZE00000008	exon	9309674	9310064	+
GWHAAZE00000008	five_prime_UTR	9303621	9303678	+
GWHAAZE00000008	five_prime_UTR	9307527	9307531	+
GWHAAZE00000008	CDS	9307532	9307638	+
GWHAAZE00000008	CDS	9308339	9308378	+
GWHAAZE00000008	CDS	9308513	9308608	+
GWHAAZE00000008	CDS	9308811	9309049	+
GWHAAZE00000008	CDS	9309207	9309293	+
GWHAAZE00000008	CDS	9309674	9310064	+

Transcript Sequence
>GWHTAAZE026768 TATTTTTTGAAACAAAAATCAATCTAGGGTTTTTGCAGAAAGCCTTCTGTTTCTTCAGGGAAAATGCCGCGTTATGATGATCGCCATGGTAGCACGCGTCTCTATGTTGGCCACTTATCTTCACGGACCCGTTCACGTGATTTGGAGGATGTCTTTAGCAGATATGGAAGAGTACGTGATGTGGATATGAAGCGAGACTTCGCCTTCGTGGAATTTAGCGACCCACGAGATGCAGATGATGCGAGATACAGCTTGAATGGTCGAGATGTAGATGGAAGTCGTATCGTTGTGGAATTTGCGAAGGGGGCACCGCGCGGTTCAGGTTCAGGAGGCGGTTTCGGGGGTGGTCCAGACCGCGGTTCAGGCGGATCTCGGGACTATCTGGGCAGAGGTCCTGCTCCGGGATCTGGTCGTTGCTTCAACTGTGGACTTGATGGCCATTGGGCTCGAGATTGCAAGGCTGGGGACTGGAAGAACAAGTGTTATCGCTGTGGGGACCGAGGTCATATAGAAAGGAATTGTCAAAACAGTCCCAAGAAACTCAAACGTGGACGGAGTTACTCCCGGTCACCATCTCCTCCTCACCGTGGTAGAAGCCGAAGTCGTAGTTACAGCAGGAGTCGCAGCTACAGCAAATCTAGGTCACCACCTCCAAAGAGGGACCACAGTGGGGAGAGAAGATCAAGGAGTCCCAAGAGACACAAGGCATCACCACCACTGCCCTCCAAAGTTGTGAGCCGCAGCCCCTCACCTGATGAGAGAAGCCCACAAGACAAGGGTACCCCATCCCCCAGGGACGACAGACGATCCACTGGCTCAGATTACAGTGGGCCCCCAAAGGCGAGAAAGAGGAGCCCAGTGGAGGAGGATGAGGATAGGACCACCCCTGCTGATGAAAATGGCTGCAGTCGTAGCCCTAGCCCTGCTGCCCTTAGGCATAGGGCCAACGGGAGTCCTGTTGATGATGATGATGAAGAAAACCGTGGTGGTACTGGTTCTCCAAGGGGCAGTGAATCGGAATAG

Network for GWHGAAZE026734

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	13	74	4.60E-15
PF00098.24	zf-CCHC	117	132	1.30E-05
PF00098.24	zf-CCHC	138	154	0.00051

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12896	SFRS7	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.453
	SRR3591706	second leaf	38.302
	SRR3591707	mature leaf	29.551
	SRR3591708	Shoot apex	77.266
	SRR3591709	Stem	45.205
	SRR3591710	White floral bud	69.096
	SRR3591711	White flower	62.107
	SRR3591712	Green floral bud	62.451
	SRR3591713	Yellow flower	64.604
SRP173429	SRR8316895	Juvenile bud stage	36.125
	SRR8316896	Juvenile bud stage	50.100
	SRR8316897	Juvenile bud stage	18.347
	SRR8316894	Third green stage	20.229
	SRR8316900	Third green stage	50.457
	SRR8316901	Third green stage	60.001
	SRR8316898	Complete white stage	27.193
	SRR8316899	Complete white stage	82.044
	SRR8316903	Complete white stage	38.951
	SRR8316902	Silver flowering stage	26.614
	SRR8316904	Silver flowering stage	24.939
	SRR8316905	Silver flowering stage	17.717
	SRR8316906	Gold flowering stage	42.556
	SRR8316907	Gold flowering stage	58.260
	SRR8316908	Gold flowering stage	48.811
SRP132670	SRR6706286	Control	51.368
	SRR6706287	Light intensity 50%	55.217
	SRR6706288	Light intensity 20%	58.335
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	50.110
	CNS0095593	Slightly white alabastrum(diploid) 2	54.294
	CNS0095594	Slightly white alabastrum(diploid) 3	48.548
	CNS0095595	Whole white alabastrum(diploid) 2	37.389
	CNS0095596	Whole white alabastrum(diploid) 3	39.018
	CNS0095597	Whole white alabastrum(diploid) 4	33.920
	CNS0095598	Silvery flower (diploied) 1	40.750
	CNS0095599	Silvery flower (diploied) 2	33.477
	CNS0095600	Silvery flower (diploied) 3	26.038
	CNS0095601	Golden flower (diploid) 1	34.438
	CNS0095602	Golden flower (diploid) 2	28.802
	CNS0095603	Golden flower (diploid) 3	31.804
	CNS0095604	Slightly white alabastrum(tetraploid) 1	51.682
	CNS0095605	Slightly white alabastrum(tetraploid) 2	54.860
	CNS0095606	Slightly white alabastrum(tetraploid) 3	71.652
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.112
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.858
	CNS0095609	Whole white alabastrum(tetraploid) 3	47.031
	CNS0095610	Silvery flower (tetraploid) 1	33.863
	CNS0095611	Silvery flower (tetraploid) 2	28.211
	CNS0095612	Silvery flower (tetraploid) 3	28.216
	CNS0095613	Golden flower (tetraploid) 1	34.046
	CNS0095614	Golden flower (tetraploid) 2	37.676
	CNS0095615	Golden flower (tetraploid) 3	26.386
CRA001975	CRR073297	Stem 1	48.289
	CRR073298	Stem 2	49.388
	CRR073299	Stem 3	39.759
	CRR073300	Leaf 1	47.555
	CRR073301	Leaf 2	53.407
	CRR073302	Leaf 3	28.764
	CRR073303	Juvenile bud 1	36.674
	CRR073304	Juvenile bud 2	20.502
	CRR073305	Juvenile bud 3	35.361
	CRR073306	Third green 1	10.856
	CRR073307	Third green 2	12.373
	CRR073308	Third green 3	10.390
	CRR073309	Second white 1	8.162
	CRR073310	Second white 2	7.800
	CRR073311	Second white 3	4.851
	CRR073312	Silver flowering 1	4.499
	CRR073313	Silver flowering 2	8.198
	CRR073314	Silver flowering 3	6.469
	CRR073315	Gold flowering 1	11.597
	CRR073316	Gold flowering 2	17.100
	CRR073317	Gold flowering 3	8.642
	CRR073318	Tawny withering 1	35.239
	CRR073319	Tawny withering 2	38.089
	CRR073320	Tawny withering 3	35.229