Gene detail

Detail information of GWHGAAZE026717

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282354.1	0	PREDICTED: splicing factor 3B subunit 3-like [Vitis vinifera]
Swissprot	tr\|O49552\|DDB1B_ARATH	1E-69	DNA damage-binding protein 1b
trEMBL	tr\|F6HRR6\|F6HRR6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57374.1}
TAIR10	AT3G55200.1	0	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	9091413	9096226	+
GWHAAZE00000008	mRNA	9091413	9096226	+
GWHAAZE00000008	exon	9091413	9094427	+
GWHAAZE00000008	exon	9094664	9095155	+
GWHAAZE00000008	exon	9096089	9096226	+
GWHAAZE00000008	CDS	9091413	9094427	+
GWHAAZE00000008	CDS	9094664	9095155	+
GWHAAZE00000008	CDS	9096089	9096226	+

Transcript Sequence
>GWHTAAZE026751 GGTTTAGCCATGTACCTCTACAGTCTCACTCTCCAACAAGCCACCTGTGTAGTCTGCGCCATCAACGGAAGCTTCTCCGGCGGCAAATCACAAGAAATTGTTGTCGCTCGAGGCAAAGTCCTCGATCTACTACGCCCCGACGATAACGGTAAGATCCAAACTATTCTCTCTGTTGAGGTTTTTGGTGCAATTAGGTCATTAGCTCAATTTAGGTTAACAGGTGCTCAAAAAGATTACATTGTAGTCGGTTCCGATTCCGGCCGAATTGTAATCCTTGAATACAACAAAGAGAAGAATGTTTTCGATAAGATTCACCAGGAAACTTTTGGTAAATCTGGCTGTCGCCGGATTGTTCCGGGCCAGTACCTGGCCATTGATCCTAAAGGTAGGGCTGTTATGATTGGTGCCCTAGAAAAACAGAAGCTTGTTTATGTGTTGAATAGGGATACTGCTGCTAGGTTAACTATTTCGTCACCTTTAGAGGCTCATAAGAGTCATACGGTTGCGTATTCGATTGCTGGGGTTGACTGTGGGTTTGATAATCCTATTTTTGCGGCGATTGAGCTCGATTACTCGGAAGCTGACCAGGATTCTACTGGTCAGGCTGCAAGTGAGGCTCAAAAACACCTTACATTTTATGAACTGGATTTAGGGCTTAATCATGTTTCGAGAAAATGGTCAGAACAGGTGGATAATGGTGCTAATATGCTTGTTACTGTTCCGGGTGGTGGGGATGGGCCTAGTGGTGTGCTTGTTTGTGCTGAGAATTTTGTTATATATAAGAATCAGGGTCACCCTGATATTCGAGCTGTCATTCCTAGACGAGCAGATTTGCCGGCTGAACGTGGGGTTCTTATAGTTTCGGCAGCTATGCACAAACAGAAATCCATGTTTTTCTTTCTTTTGCAAACGGAGTATGGGGATATTTTTAAAGTGACATTGGAACATGATAATGAACGTGTTTCGGAGTTGAGGATTAAGTATTTCGATACGATTCCAGTTACGTCGTCATTGTGTGTGATGAAGTCGGGGTTTCTGTTTGCTGCATCTGAGTTTGGGAACCATGGTTTATATCAGTTTCAGGCCATAGGAGATGATCCTGATGTGGAATCATCTTCTTCTACATTGATGGAAACTGAAGAAGGTTTTCAGCCTGTATTTTTTCAGCCTAGAGGGCTGAAGAACCTTGTTAGGATCGATCAAGTTGAGAGCTTAAGTCCAATAATGGACATGAAAGTCGTAAATTTGTTCGAGGAGGAAACTCCTCAGATATTTTCACTTTGTGGGCGGGGTCCTCGTTCATCTCTAAGGATACTAAGACCGGGTTTGGCTATCAGTGAAATGGCTGTGTCACAGCTCCCTGGTGTTCCAAGTGCTGTTTGGACTGTGAAAAAGAATGTCAATGATGAATTTGATGCTTACATTGTTGTTTCATTTGCAAATGCAACTCTTGTGCTTTCAATTGGTGAGACAGTTGAAGAAGTCAGTGATAGTGGGTTTCTTGATACTACGCCCTCGCTTGCTGTCTCTTTGATAGGCGACGATTCTCTTATGCAAGTTCATCCAAGTGGAATCAGACACATAAGGGAAGATGGGCGTATTAATGAGTGGAGAACTCCTGGAAAGAGAACAATTGTTAAGGTTGGGTCTAATAGACTTCAAGTGGTTATTGCATTAAGTGGAGGGGAACTGATATACTTTGAAGTTGATATGACAGGGCAGTTGATGGAAGTTGAAAAGCATGAAATGTCTGGGGATGTTGCGTGTTTGGATATTGCCCCCGTTCCTGAAGGAAGACAGAGATCTCGCTTCCTTGCCGTCGGATCATATGACAATACTATCCGTATCTTATCGTTGGATCCTGATGACTGTATGCAGATTCTGAGTCTGCAAAGTGTCTCTTCGCCTCCTGAATCTCTCCTTTTTCTTGAAGTTCAGGCTTCTATTGGTGGGGAGGATGGTGCAGATCACCCTGCTAGCCTTTTCCTTAATGCTGGTTTACAAAGTGGGGTTCTCTTCAGAACAGTTGTGGATATGGTGACAGGTCAGCTATCTGACGCTCGGTCCCGTTTCCTTGGTCTGCGGGCCCCCAAGCTCTTTTCTGTGCTTGTTAGAGGACGGCGTGCTATGCTTTGCTTGTCGAGTAGACCCTGGCTTGGTTATATCCACCAAGGACACTTCTTGCTAACTCCTCTTTCATACGAGACTCTTGAATATGCAGCCTCGTTCTCATCTGATCAGTGTGCGGAAGGTGTAGTTGCTGTTGCAGGGGATGCATTAAGGGTTTTCACGATTGAGAGATTAGGAGAAACTTTCAATGAAACTGCGATTCCTTTGAGGTACACTCCAAGAAAGTTTGTGCTTCAACCCAAGAAGAAGTTGTTGGTAATTATTGAGAGTGATCAGGGTGCATTCACAGCAGAAGAGCGAGAAGCTGCAAGAAAGGAGTGCTTTGAGGCTGCTGGTATGGGGGAAAATGGGAAAATGGAGACGGAGAATGGTGGTGATGATGAGGACAAGGATGATCCGCTCTCTGATGAGCAGTACGGTTACCCAAAGGCAGAGTCGGAGAAGTGGGTTTCTTGCATAAGAGTTCTTGACCCGAGGACAACAGAGACAACTTGCCTACTTGAGCTTCAAGACAATGAAGCTGCATTCAGTATATGCACTGTTAATTTCCACGATAAGGAGTATGGAACTCTCCTAGCTGTTGGAACGGCAAAGGGCCTTCAGTTTTGGCCAAAAAGATCTTTTTCTGCTGGTTATATTCACATTTATCGGTTTGTAAAAGATGGGAGGTCCCTTGAGCTTTTGCACAAGACACAAGTGGATGGTGTACCCCTTGCCTTATGCCAGTTCCAGGGAAGATTACTGGCCGGAATAGGACCTGTGCTTAGATTGTATGATTTAGGGAAAAGGAGACTGCTAAGAAAATGTGAGAATAAGCTGTTCCCCAACACAATCACCTCTATTCATACTTATCGTGATCGGATTTATGTTGGTGACATTCAGGAGTCATTCCATTACTGCAAATACAGACGGGATGAAAACCAACTCTACGTATTTGCTGACGACTCTGTTCCAAGATGGCTTACAGCATCATATCACGTTGATTTTGACACCATGGCTGGTGCAGACAAGTTTGGGAACATTTACTTTGCCCGGTTACCACAGGATGTTTCTGATGAGATTGAAGAAGATCCTACGGGTGGAAAGATTAAGTGGGAACAGGGGAAGCTTAATGGAGCCCCAAACAAGCTAGAGGAAATAGTGCAATTCCACGTTGGCGATGTGGTTACATGCTTGCAAAAAGCGGCTCTAATTCCAGGTGGTATGGAATGCATGATTTACGGGACGGTGATGGGGAGCTTAGGAGCATTGCTTGCATTCAACTCTCGGGACGATGTTGACTTTTTCTCCCATTTGGAGATGCATATGAGACAGGAACACCCTCCGTTGTGTGGACGAGATCACATGGCCTATAGATCTGCCTATTTTCCTGTTAAGGATGTGATCGACGGAGATTTGTGCGAGCAGTTTCCAACACTGCCTTTGGATTTGCAGAGAAAAATTGCAGATGAATTGGATCGTACTCCAGGGGAGATTATGAAAAAGCTAGAAGAAGTTCGTAATAAAATCGTCTGA

Network for GWHGAAZE026717

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10433.10	MMS1_N	78	592	1.50E-170
PF03178.16	CPSF_A	861	1180	2.00E-92

Protein Sequence

>GWHPAAZE026735
GLAMYLYSLTLQQATCVVCAINGSFSGGKSQEIVVARGKVLDLLRPDDNGKIQTILSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGCRRIVPGQYLAIDPKGRAVMIGALEKQKLVYVLNRDTAARLTISSPLEAHKSHTVAYSIAGVDCGFDNPIFAAIELDYSEADQDSTGQAASEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKNQGHPDIRAVIPRRADLPAERGVLIVSAAMHKQKSMFFFLLQTEYGDIFKVTLEHDNERVSELRIKYFDTIPVTSSLCVMKSGFLFAASEFGNHGLYQFQAIGDDPDVESSSSTLMETEEGFQPVFFQPRGLKNLVRIDQVESLSPIMDMKVVNLFEEETPQIFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANATLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKRTIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCMQILSLQSVSSPPESLLFLEVQASIGGEDGADHPASLFLNAGLQSGVLFRTVVDMVTGQLSDARSRFLGLRAPKLFSVLVRGRRAMLCLSSRPWLGYIHQGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTPRKFVLQPKKKLLVIIESDQGAFTAEEREAARKECFEAAGMGENGKMETENGGDDEDKDDPLSDEQYGYPKAESEKWVSCIRVLDPRTTETTCLLELQDNEAAFSICTVNFHDKEYGTLLAVGTAKGLQFWPKRSFSAGYIHIYRFVKDGRSLELLHKTQVDGVPLALCQFQGRLLAGIGPVLRLYDLGKRRLLRKCENKLFPNTITSIHTYRDRIYVGDIQESFHYCKYRRDENQLYVFADDSVPRWLTASYHVDFDTMAGADKFGNIYFARLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKLEEIVQFHVGDVVTCLQKAALIPGGMECMIYGTVMGSLGALLAFNSRDDVDFFSHLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDLQRKIADELDRTPGEIMKKLEEVRNKIV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12830	SF3B3, SAP130, RSE1	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.451
	SRR3591706	second leaf	16.329
	SRR3591707	mature leaf	14.705
	SRR3591708	Shoot apex	35.977
	SRR3591709	Stem	24.323
	SRR3591710	White floral bud	22.997
	SRR3591711	White flower	33.944
	SRR3591712	Green floral bud	29.543
	SRR3591713	Yellow flower	26.481
SRP173429	SRR8316895	Juvenile bud stage	20.388
	SRR8316896	Juvenile bud stage	23.455
	SRR8316897	Juvenile bud stage	13.028
	SRR8316894	Third green stage	10.760
	SRR8316900	Third green stage	27.335
	SRR8316901	Third green stage	25.250
	SRR8316898	Complete white stage	6.350
	SRR8316899	Complete white stage	32.816
	SRR8316903	Complete white stage	13.116
	SRR8316902	Silver flowering stage	8.647
	SRR8316904	Silver flowering stage	12.528
	SRR8316905	Silver flowering stage	6.094
	SRR8316906	Gold flowering stage	18.991
	SRR8316907	Gold flowering stage	15.483
	SRR8316908	Gold flowering stage	20.139
SRP132670	SRR6706286	Control	26.643
	SRR6706287	Light intensity 50%	27.042
	SRR6706288	Light intensity 20%	29.867
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.076
	CNS0095593	Slightly white alabastrum(diploid) 2	18.668
	CNS0095594	Slightly white alabastrum(diploid) 3	16.195
	CNS0095595	Whole white alabastrum(diploid) 2	15.342
	CNS0095596	Whole white alabastrum(diploid) 3	13.737
	CNS0095597	Whole white alabastrum(diploid) 4	13.861
	CNS0095598	Silvery flower (diploied) 1	19.169
	CNS0095599	Silvery flower (diploied) 2	20.022
	CNS0095600	Silvery flower (diploied) 3	27.860
	CNS0095601	Golden flower (diploid) 1	18.548
	CNS0095602	Golden flower (diploid) 2	29.086
	CNS0095603	Golden flower (diploid) 3	28.227
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.462
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.811
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.682
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.459
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.848
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.668
	CNS0095610	Silvery flower (tetraploid) 1	26.283
	CNS0095611	Silvery flower (tetraploid) 2	27.249
	CNS0095612	Silvery flower (tetraploid) 3	18.564
	CNS0095613	Golden flower (tetraploid) 1	11.027
	CNS0095614	Golden flower (tetraploid) 2	23.541
	CNS0095615	Golden flower (tetraploid) 3	18.790
CRA001975	CRR073297	Stem 1	36.284
	CRR073298	Stem 2	33.502
	CRR073299	Stem 3	30.839
	CRR073300	Leaf 1	33.850
	CRR073301	Leaf 2	31.322
	CRR073302	Leaf 3	28.883
	CRR073303	Juvenile bud 1	33.950
	CRR073304	Juvenile bud 2	24.050
	CRR073305	Juvenile bud 3	44.734
	CRR073306	Third green 1	5.599
	CRR073307	Third green 2	5.029
	CRR073308	Third green 3	7.984
	CRR073309	Second white 1	14.727
	CRR073310	Second white 2	8.906
	CRR073311	Second white 3	12.086
	CRR073312	Silver flowering 1	9.482
	CRR073313	Silver flowering 2	12.842
	CRR073314	Silver flowering 3	8.207
	CRR073315	Gold flowering 1	22.499
	CRR073316	Gold flowering 2	34.896
	CRR073317	Gold flowering 3	29.759
	CRR073318	Tawny withering 1	30.327
	CRR073319	Tawny withering 2	24.871
	CRR073320	Tawny withering 3	33.341