Gene detail

Detail information of GWHGAAZE026694

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010065984.1	PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Eucalyptus grandis]
COG	YP_001415072.1	2-oxoglutarate dehydrogenase E1 component
trEMBL	tr\|A0A059BCG3\|A0A059BCG3_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW63729.1}
TAIR10	AT3G55410.1	2-oxoglutarate dehydrogenase, E1 component

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	8755091	8761508	+
GWHAAZE00000008	mRNA	8755091	8761508	+
GWHAAZE00000008	exon	8755091	8756641	+
GWHAAZE00000008	exon	8757564	8757790	+
GWHAAZE00000008	exon	8758236	8758568	+
GWHAAZE00000008	exon	8758971	8759191	+
GWHAAZE00000008	exon	8759679	8759692	+
GWHAAZE00000008	exon	8759785	8759913	+
GWHAAZE00000008	exon	8760009	8760224	+
GWHAAZE00000008	exon	8760788	8760911	+
GWHAAZE00000008	exon	8761270	8761508	+
GWHAAZE00000008	CDS	8755091	8756641	+
GWHAAZE00000008	CDS	8757564	8757790	+
GWHAAZE00000008	CDS	8758236	8758568	+
GWHAAZE00000008	CDS	8758971	8759191	+
GWHAAZE00000008	CDS	8759679	8759692	+
GWHAAZE00000008	CDS	8759785	8759913	+
GWHAAZE00000008	CDS	8760009	8760224	+
GWHAAZE00000008	CDS	8760788	8760911	+
GWHAAZE00000008	CDS	8761270	8761508	+

Transcript Sequence
>GWHTAAZE026728 ATGACGTGGTTTAGAGCGGGGTCTAGTGTAGCAAAGCTTGCTATTAGGAGAACTCTGTCAGAGAGTAGATCCTATGTAGCAAGGGCACGTACAATTCCACCACAAAGTCGATATATTCATACATCAGTTTTTAAGTCAAAGGCGCAAGCTGCACCTGTACCTCGACCTGTTCCACTCTCTAAGTTAACTGATAGCTTCTTAGATGGGACAAGCAGTGTCTACCTCGAGGAGCTTCAGAGGGCTTGGGAAGCGGACCCGGATAGCGTTGATGAGTCATGGGACAATTTCTTTAGGAACTTTGTTGGCACAGCAGCCACGTCGCCTGGAATATCTGGCCAAACAATTCAAGAGAGCATGAGGTTGCTGTTACTTGTGAGGGCTTACCAGGTTAATGGTCATATGAAAGCAAAGTTAGACCCATTGGGTTTGGAAGAGAGGGAGGTTCCAGATGACTTAGACCCAGCTCTTTATGGATTAGGTGAAGCTGATCTGGACCGAGAATTCTTCCTCGGTGTATGGAGGATGGCTGGATTTCTTTCTGAGAATCGGCCTATACAAACCCTTAGAGCCATATTGACACGGCTTGAGCAGGCATACTGTGGAAGCATTGGTTACGAGTACATGCACATCGCTGACCGAGAAAAATGTAATTGGTTGAGAGACAAGATTGAAACTCCTACACCGATGCAATATAATCGGCAGCGACGCGAGGTTATCCTCGACAGGCTTATATGGAGTACTCAGTTTGAGAACTTCTTGGCTACTAAGTGGACTGCAGCCAAAAGGTTTGGGCTCGAAGGTGGTGAGACCTTGATTCCAGGGATGAAGGAGATGTTTGACCGGTCTGCAGATCTTGGGGTTGAGAGCATTGTCATTGGAATGTCTCACAGAGGAAGACTAAATGTCTTGGGAAACGTTGTACGGAAGCCCCTTCGCCAGATCTTTAGTGAGTTTAGCGGTGGTACAAAGCCTGTGGACGAAGTCGGGCTTTACACCGGAACCGGTGATGTCAAGTATCACTTGGGAACTTCTTATGATCGGCCAACTAGGGGTGGTAAGAGAATTCATTTGTCGTTGGTTGCAAACCCGAGTCATCTGGAAGCTGTGGACCCTGTTGTAGTTGGGAAAACTAGAGCGAAACAATATTACGCCAATGATGCCGATAGGACAAAGAATATGGGTGTTTTAATTCATGGGGATGGTAGCTTTGCTGGACAAGGTGTTGTGTATGAAACCCTTCATTTGAGTGCCCTTCCAAATTACACAACTGGTGGGACTATACACATAGTGGTGAATAATCAAGTGGCTTTTACCACTGATCCAAAAGCTGGAAGATCTTCACAATATTGTACTGATGTTGCCAAAGCCTTGAATGTTCCCATTTTTCATGTCAATGGTGATGATATGGAGGCAGTGGTCCACGTCTGTGAGCTTGCAGCGGAGTGGCGCCAGACATTCCACACAGATGTTGTTGTTGATATAGTTTGTTATCGCCGATTTGGGCACAATGAGATTGATGAGCCATCTTTTACCCAACCCAAAATGTACAAGGTCATTCGAAATCATCCCTCAGCGCTTGAGATTTATGAGAACAAACTGTTAGAATCCGGTCAGGTGACAAAAAAAGACATTGAGACGATACAGAGCAAGGTTAATTCAATTCTTAATGATGAATTCTTGGCCAGCAAAGACTATATTACCAAAAGAAGGGACTGGCTTTCAGCTTACTGGTCTGGATTCAAGTCCCCTGAACAGCTTTCACGTATCCGCAACACTGGGGTCAACCCAGAGATTTTAAAGAATGTTGGTAAAGCAATCACAACCCTTCCAGACACTTTTAAGCCTCACAGAGCGGTAAAGAAAATATTTTCAGAACGTTCAAAGATGATTGAAACAGGGGAGGGAATTGACTGGGCGGTAGGGGAAGCACTTGCTTTTGCAACATTGCTTATTGAAGGGAATCATGTTAGGTTGAGTGGTCAAGATGTTGAGAGAGGTACTTTTAGTCATCGCCACTCTGTACTTCATGATCAGGAAACAGGGGAGAAGTACTGTCCATTGGATCATGTTATGATGAACCAAAATGAGGAGATGTTTACTGTAAGCAACAGTTCTCTTTCAGAGTTTGGTGTTCTGGGATTTGAATTGGGCTACTCAATGGAAAATCCAAATTCGTTGGTGTTGTGGGAAGCCCAATTCGGTGATTTTGCCAATGGAGCCCATGTCATATTCGATCAGTTTGTGAGCAGTGGGGAGGCCAAGTGGTTGCGTCAGTCTGGATTAGTTGTGTTGCTACCTCATGGTTATGATGGCCAGGGTCCTGAACATTCAAATCCTCTTACAGATATGAGCGATGATAATCCCTACGCTATACCAGAGATGGATCCAACACTTAGGAAGCAAATCCAGGAATGCAATTGGCAGGTTGTGAATGTCACTACTCCTGCAAATTATTTCCACGTTCTGCGACGTCAAATAAACAGGGAGTTCCGTAAGCCTCTTATTGTGATGTCTCCAAAGAACTTGCTTCGTCACAAAGAGTGCAAGTCTAATCTATCCGAGTTTGATGATGTCCAAGGCCACCCAGGTTTTGATAAACAAGGCACCAGATTTAAGCGCCTTATTAAGGACCAGAATGACCACTCGGATCTCGAGGAGGGTATTAGGCGTTTGATTCTTTGCTCCGGAAAGGTTTACTACGAGATTGACGATGAGAGAAAGAAACTCGGTAGCAAGGACATTGCGATATGTCGGGTGGAACAACTTTGTCCTTTCCCCTACGACCTTGTCCAACGTGAACTGAAGCGTTATCCAAATGCAGAGATCGTGTGGTGCCAAGAAGAGCCAATGAACATGGGGGCATACACATACATTGCACCTCGCCTTTGCACAGCCATGACAGCACTGGGCAGAGGCACATCGGACGACATCAAATACATTGGCCGGGCCCCATCTGCGGCCACGGCTACTGGCTTTTACGGGGTCCATGTGAAAGAACAGACTGACCTTGTTCAGAAAGCCATGCAAGCCGAGCCTATTAACTATCCGAGGTAA

Network for GWHGAAZE026694

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16078.6	2-oxogl_dehyd_N	64	101	2.80E-15
PF00676.21	E1_dh	244	565	6.30E-64
PF02779.25	Transket_pyr	635	846	1.50E-58
PF16870.6	OxoGdeHyase_C	867	1008	3.10E-49

Protein Sequence

>GWHPAAZE026712
MTWFRAGSSVAKLAIRRTLSESRSYVARARTIPPQSRYIHTSVFKSKAQAAPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPDSVDESWDNFFRNFVGTAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEEREVPDDLDPALYGLGEADLDREFFLGVWRMAGFLSENRPIQTLRAILTRLEQAYCGSIGYEYMHIADREKCNWLRDKIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTAAKRFGLEGGETLIPGMKEMFDRSADLGVESIVIGMSHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYANDADRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPKAGRSSQYCTDVAKALNVPIFHVNGDDMEAVVHVCELAAEWRQTFHTDVVVDIVCYRRFGHNEIDEPSFTQPKMYKVIRNHPSALEIYENKLLESGQVTKKDIETIQSKVNSILNDEFLASKDYITKRRDWLSAYWSGFKSPEQLSRIRNTGVNPEILKNVGKAITTLPDTFKPHRAVKKIFSERSKMIETGEGIDWAVGEALAFATLLIEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVMMNQNEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAHVIFDQFVSSGEAKWLRQSGLVVLLPHGYDGQGPEHSNPLTDMSDDNPYAIPEMDPTLRKQIQECNWQVVNVTTPANYFHVLRRQINREFRKPLIVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDHSDLEEGIRRLILCSGKVYYEIDDERKKLGSKDIAICRVEQLCPFPYDLVQRELKRYPNAEIVWCQEEPMNMGAYTYIAPRLCTAMTALGRGTSDDIKYIGRAPSAATATGFYGVHVKEQTDLVQKAMQAEPINYPR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00164	OGDH, sucA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Citrate cycle	map00020

Gene Ontology

GO term	Ontology	Name
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0055114	biological_process	oxidation-reduction process
GO:0016624	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
GO:0004591	molecular_function	oxoglutarate dehydrogenase (succinyl-transferring) activity
GO:0030976	molecular_function	thiamine pyrophosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	118.773
	SRR3591706	second leaf	64.367
	SRR3591707	mature leaf	67.992
	SRR3591708	Shoot apex	73.336
	SRR3591709	Stem	79.436
	SRR3591710	White floral bud	116.633
	SRR3591711	White flower	110.270
	SRR3591712	Green floral bud	117.353
	SRR3591713	Yellow flower	103.180
SRP173429	SRR8316895	Juvenile bud stage	54.818
	SRR8316896	Juvenile bud stage	78.603
	SRR8316897	Juvenile bud stage	42.621
	SRR8316894	Third green stage	37.118
	SRR8316900	Third green stage	142.460
	SRR8316901	Third green stage	126.897
	SRR8316898	Complete white stage	51.959
	SRR8316899	Complete white stage	106.639
	SRR8316903	Complete white stage	83.023
	SRR8316902	Silver flowering stage	52.484
	SRR8316904	Silver flowering stage	72.827
	SRR8316905	Silver flowering stage	32.833
	SRR8316906	Gold flowering stage	134.011
	SRR8316907	Gold flowering stage	125.932
	SRR8316908	Gold flowering stage	153.253
SRP132670	SRR6706286	Control	123.565
	SRR6706287	Light intensity 50%	129.024
	SRR6706288	Light intensity 20%	134.706
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	73.250
	CNS0095593	Slightly white alabastrum(diploid) 2	74.846
	CNS0095594	Slightly white alabastrum(diploid) 3	68.995
	CNS0095595	Whole white alabastrum(diploid) 2	79.011
	CNS0095596	Whole white alabastrum(diploid) 3	87.961
	CNS0095597	Whole white alabastrum(diploid) 4	75.104
	CNS0095598	Silvery flower (diploied) 1	77.304
	CNS0095599	Silvery flower (diploied) 2	73.638
	CNS0095600	Silvery flower (diploied) 3	183.376
	CNS0095601	Golden flower (diploid) 1	68.734
	CNS0095602	Golden flower (diploid) 2	163.680
	CNS0095603	Golden flower (diploid) 3	159.226
	CNS0095604	Slightly white alabastrum(tetraploid) 1	90.586
	CNS0095605	Slightly white alabastrum(tetraploid) 2	77.537
	CNS0095606	Slightly white alabastrum(tetraploid) 3	129.203
	CNS0095607	Whole white alabastrum(tetraploid) 1	76.641
	CNS0095608	Whole white alabastrum(tetraploid) 2	89.434
	CNS0095609	Whole white alabastrum(tetraploid) 3	157.049
	CNS0095610	Silvery flower (tetraploid) 1	145.621
	CNS0095611	Silvery flower (tetraploid) 2	161.758
	CNS0095612	Silvery flower (tetraploid) 3	181.815
	CNS0095613	Golden flower (tetraploid) 1	78.117
	CNS0095614	Golden flower (tetraploid) 2	158.883
	CNS0095615	Golden flower (tetraploid) 3	117.706
CRA001975	CRR073297	Stem 1	92.559
	CRR073298	Stem 2	91.495
	CRR073299	Stem 3	90.780
	CRR073300	Leaf 1	135.674
	CRR073301	Leaf 2	124.590
	CRR073302	Leaf 3	123.734
	CRR073303	Juvenile bud 1	149.250
	CRR073304	Juvenile bud 2	119.219
	CRR073305	Juvenile bud 3	168.901
	CRR073306	Third green 1	97.494
	CRR073307	Third green 2	69.958
	CRR073308	Third green 3	85.400
	CRR073309	Second white 1	142.669
	CRR073310	Second white 2	108.337
	CRR073311	Second white 3	119.177
	CRR073312	Silver flowering 1	119.589
	CRR073313	Silver flowering 2	128.636
	CRR073314	Silver flowering 3	114.243
	CRR073315	Gold flowering 1	42.628
	CRR073316	Gold flowering 2	57.172
	CRR073317	Gold flowering 3	54.865
	CRR073318	Tawny withering 1	86.055
	CRR073319	Tawny withering 2	73.973
	CRR073320	Tawny withering 3	69.264