Detail information of GWHGAAZE026692


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010553292.13.27061E-86PREDICTED: actin-depolymerizing factor 1 [Tarenaya hassleriana]
Swissprottr|Q9ZSK4|ADF3_ARATH6E-85Actin-depolymerizing factor 3
trEMBLtr|A9PIW8|A9PIW8_9ROSI2E-86Putative uncharacterized protein {ECO:0000313|EMBL:ABK96321.1}
TAIR10AT5G59880.16E-67actin depolymerizing factor 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene87033178704086-
GWHAAZE00000008mRNA87033178704086-
GWHAAZE00000008exon87033178703467-
GWHAAZE00000008exon87037888704086-
GWHAAZE00000008CDS87037888704086-
GWHAAZE00000008CDS87033178703467-
Transcript Sequence

Network for GWHGAAZE026692

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0142GO:0015629 actin cytoskeleton GOslim:cellular_component
GO:0030042 actin filament depolymerization GOslim:biological_process
GO:0016779 nucleotidyltransferase activity GOslim:molecular_function
GO:0003779 actin binding GOslim:molecular_function
GO:0009058 biosynthetic process GOslim:biological_process
map04810 Regulation of actin cytoskeleton
map04360 Axon guidance
map00051 Fructose and mannose metabolism
map04666 Fc gamma R-mediated phagocytosis


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00241.21Cofilin_ADF241451.30E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05765CFL Regulation of actin cytoskeleton map04810
Fc gamma R-mediated phagocytosismap04666
Axon guidancemap04360

Gene Ontology

GO term OntologyName
GO:0030042biological_processactin filament depolymerization
GO:0015629cellular_componentactin cytoskeleton
GO:0003779molecular_functionactin binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1256.410
SRR3591706second leaf637.666
SRR3591707mature leaf627.183
SRR3591708Shoot apex706.854
SRR3591709Stem1105.661
SRR3591710White floral bud1087.215
SRR3591711White flower1157.487
SRR3591712Green floral bud1041.953
SRR3591713Yellow flower1080.709
SRP173429 SRR8316895Juvenile bud stage 426.608
SRR8316896Juvenile bud stage 518.772
SRR8316897Juvenile bud stage 318.602
SRR8316894Third green stage 261.603
SRR8316900Third green stage 873.141
SRR8316901Third green stage 836.945
SRR8316898Complete white stage 667.880
SRR8316899Complete white stage 1601.043
SRR8316903Complete white stage 949.464
SRR8316902Silver flowering stage601.999
SRR8316904Silver flowering stage835.315
SRR8316905Silver flowering stage422.193
SRR8316906Gold flowering stage 920.431
SRR8316907Gold flowering stage 874.605
SRR8316908Gold flowering stage 959.397
SRP132670SRR6706286Control1395.445
SRR6706287Light intensity 50%1429.578
SRR6706288Light intensity 20%1580.064
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1608.756
CNS0095593Slightly white alabastrum(diploid) 2731.154
CNS0095594Slightly white alabastrum(diploid) 3530.955
CNS0095595Whole white alabastrum(diploid) 2655.809
CNS0095596Whole white alabastrum(diploid) 3595.029
CNS0095597Whole white alabastrum(diploid) 4659.935
CNS0095598Silvery flower (diploied) 1657.356
CNS0095599Silvery flower (diploied) 2672.064
CNS0095600Silvery flower (diploied) 31104.254
CNS0095601Golden flower (diploid) 1614.471
CNS0095602Golden flower (diploid) 2921.831
CNS0095603Golden flower (diploid) 3918.833
CNS0095604Slightly white alabastrum(tetraploid) 1570.417
CNS0095605Slightly white alabastrum(tetraploid) 2501.605
CNS0095606Slightly white alabastrum(tetraploid) 3882.722
CNS0095607Whole white alabastrum(tetraploid) 1403.570
CNS0095608Whole white alabastrum(tetraploid) 2464.574
CNS0095609Whole white alabastrum(tetraploid) 3636.682
CNS0095610Silvery flower (tetraploid) 1872.422
CNS0095611Silvery flower (tetraploid) 2839.497
CNS0095612Silvery flower (tetraploid) 3693.208
CNS0095613Golden flower (tetraploid) 1738.673
CNS0095614Golden flower (tetraploid) 2735.675
CNS0095615Golden flower (tetraploid) 3894.003
CRA001975CRR073297Stem 1665.409
CRR073298Stem 2636.609
CRR073299Stem 3879.649
CRR073300Leaf 1931.300
CRR073301Leaf 2935.187
CRR073302Leaf 31093.860
CRR073303Juvenile bud 11434.552
CRR073304Juvenile bud 21329.264
CRR073305Juvenile bud 31458.344
CRR073306Third green 11404.497
CRR073307Third green 21718.718
CRR073308Third green 31400.851
CRR073309Second white 11191.060
CRR073310Second white 2754.250
CRR073311Second white 3527.671
CRR073312Silver flowering 1739.357
CRR073313Silver flowering 2922.212
CRR073314Silver flowering 3669.136
CRR073315Gold flowering 1855.142
CRR073316Gold flowering 2847.844
CRR073317Gold flowering 3928.372
CRR073318Tawny withering 11085.209
CRR073319Tawny withering 21105.754
CRR073320Tawny withering 31263.682